RNA–Protein interactions for RNA: ENST00000553474.5

SHMT2-205, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2 BASIC

Gene SHMT2, Length 1,765 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-205ENST00000553474 HACD3Q9P035 362 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 CPSF2Q9P2I0 782 aaKnown RBP13.04□□□□□ -0.32
SHMT2-205ENST00000553474 CDYLQ9Y232 598 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 ATP11BQ9Y2G3 1177 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 HS3ST4Q9Y661 456 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 IGLV3-10A0A075B6K4 115 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-205ENST00000553474 FAM92AA1XBS5 289 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 MAGEA13PA6NCF6 341 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 SYN3O14994 580 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 TADA2AO75478 443 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 PIGNO95427 931 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 COL6A1P12109 1028 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 ITGAXP20702 1163 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 ATP5F1P24539 256 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-205ENST00000553474 SLC1A2P43004 574 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 NAGLUP54802 743 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 DSC1Q08554 894 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 TBL3Q12788 808 aaKnown RBP13.04□□□□□ -0.32
SHMT2-205ENST00000553474 TRIM60Q495X7 471 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 PAN2Q504Q3 1202 aaKnown RBP13.04□□□□□ -0.32
SHMT2-205ENST00000553474 VWA5B1Q5TIE3 1220 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 AGAP9Q5VTM2 703 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 NEPROQ6NW34 567 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 ESRP1Q6NXG1 681 aaKnown RBP13.04□□□□□ -0.32
SHMT2-205ENST00000553474 KLC3Q6P597 504 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 KDELC1Q6UW63 502 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 FRMD7Q6ZUT3 714 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 DHDDSQ86SQ9 333 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 TMEM126BQ8IUX1 230 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 DEFB107AQ8IZN7 70 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 ATP6V0D2Q8N8Y2 350 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 KCTD4Q8WVF5 259 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 CLPTM1LQ96KA5 538 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 GPR78Q96P69 363 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 PGLYRP2Q96PD5 576 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 TMEM209Q96SK2 561 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 ZYG11BQ9C0D3 744 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 PRDM5Q9NQX1 630 aaPredicted RBP13.04□□□□□ -0.32
SHMT2-205ENST00000553474 SPATS2LQ9NUQ6 558 aaKnown RBP13.04□□□□□ -0.32
SHMT2-205ENST00000553474 COMMD8Q9NX08 183 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 ZDHHC7Q9NXF8 308 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 IL37Q9NZH6 218 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 XPR1Q9UBH6 696 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 SFMBT1Q9UHJ3 866 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 SCOCQ9UIL1 159 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 FBXO5Q9UKT4 447 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 POMPQ9Y244 141 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 INPP5FQ9Y2H2 1132 aa13.04□□□□□ -0.32
SHMT2-205ENST00000553474 A0A1W2PQH9 124 aa13.03□□□□□ -0.32
SHMT2-205ENST00000553474 MEI4A8MW99 385 aa13.03□□□□□ -0.32
SHMT2-205ENST00000553474 E9PBE3 544 aa13.03□□□□□ -0.32
SHMT2-205ENST00000553474 PHGDHO43175 533 aaKnown RBP13.03□□□□□ -0.32
SHMT2-205ENST00000553474 SLC7A4O43246 635 aa13.03□□□□□ -0.32
SHMT2-205ENST00000553474 ZBTB14O43829 449 aa13.03□□□□□ -0.32
SHMT2-205ENST00000553474 KLHL41O60662 606 aa13.03□□□□□ -0.32
SHMT2-205ENST00000553474 RBP1P09455 135 aa13.03□□□□□ -0.32
SHMT2-205ENST00000553474 SERPINH1P50454 418 aaKnown RBP13.03□□□□□ -0.32
SHMT2-205ENST00000553474 CUL3Q13618 768 aa13.03□□□□□ -0.32
SHMT2-205ENST00000553474 RFTN1Q14699 578 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-205ENST00000553474 CNGA3Q16281 694 aa13.03□□□□□ -0.32
SHMT2-205ENST00000553474 TRIM71Q2Q1W2 868 aaKnown RBP13.03□□□□□ -0.32
SHMT2-205ENST00000553474 ZNF470Q6ECI4 717 aa13.03□□□□□ -0.32
SHMT2-205ENST00000553474 SLC39A5Q6ZMH5 540 aa13.03□□□□□ -0.32
SHMT2-205ENST00000553474 SLC24A5Q71RS6 500 aa13.03□□□□□ -0.32
SHMT2-205ENST00000553474 SLC41A1Q8IVJ1 513 aa13.03□□□□□ -0.32
SHMT2-205ENST00000553474 PHTF2Q8N3S3 785 aa13.03□□□□□ -0.32
SHMT2-205ENST00000553474 TEX26Q8N6G2 289 aa13.03□□□□□ -0.32
SHMT2-205ENST00000553474 POU5F2Q8N7G0 328 aa13.03□□□□□ -0.32
SHMT2-205ENST00000553474 ACVR1CQ8NER5 493 aa13.03□□□□□ -0.32
SHMT2-205ENST00000553474 ZNF419Q96HQ0 510 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-205ENST00000553474 MAELQ96JY0 434 aaKnown RBP13.03□□□□□ -0.32
SHMT2-205ENST00000553474 BTN2A3PQ96KV6 586 aa13.03□□□□□ -0.32
SHMT2-205ENST00000553474 OXCT2Q9BYC2 517 aaPredicted RBP13.03□□□□□ -0.32
SHMT2-205ENST00000553474 ZNF385DQ9H6B1 395 aa13.03□□□□□ -0.32
SHMT2-205ENST00000553474 EML4Q9HC35 981 aaKnown RBP13.03□□□□□ -0.32
SHMT2-205ENST00000553474 STK39Q9UEW8 545 aa13.03□□□□□ -0.32
SHMT2-205ENST00000553474 WASF2Q9Y6W5 498 aa13.03□□□□□ -0.32
SHMT2-205ENST00000553474 E2F8A0AVK6 867 aa13.02□□□□□ -0.32
SHMT2-205ENST00000553474 GOLGA8TH3BQL2 631 aa13.02□□□□□ -0.32
SHMT2-205ENST00000553474 MSI1O43347 362 aaKnown RBP13.02□□□□□ -0.32
SHMT2-205ENST00000553474 PEX1O43933 1283 aa13.02□□□□□ -0.32
SHMT2-205ENST00000553474 DLX3O60479 287 aa13.02□□□□□ -0.32
SHMT2-205ENST00000553474 PMPCBO75439 489 aa13.02□□□□□ -0.32
SHMT2-205ENST00000553474 RTN3O95197 1032 aaPredicted RBP13.02□□□□□ -0.32
SHMT2-205ENST00000553474 PEX11BO96011 259 aa13.02□□□□□ -0.32
SHMT2-205ENST00000553474 CPB1P15086 417 aa13.02□□□□□ -0.32
SHMT2-205ENST00000553474 MPSTP25325 297 aa13.02□□□□□ -0.32
SHMT2-205ENST00000553474 WNT3AP56704 352 aa13.02□□□□□ -0.32
SHMT2-205ENST00000553474 TBX4P57082 545 aa13.02□□□□□ -0.32
SHMT2-205ENST00000553474 SMARCB1Q12824 385 aa13.02□□□□□ -0.32
SHMT2-205ENST00000553474 CTBP1Q13363 440 aa13.02□□□□□ -0.32
SHMT2-205ENST00000553474 MSLNQ13421 630 aaPredicted RBP13.02□□□□□ -0.32
SHMT2-205ENST00000553474 SMAD1Q15797 465 aaKnown RBP13.02□□□□□ -0.32
SHMT2-205ENST00000553474 PSMD5Q16401 504 aa13.02□□□□□ -0.32
SHMT2-205ENST00000553474 LRRC26Q2I0M4 334 aa13.02□□□□□ -0.32
SHMT2-205ENST00000553474 LSM12Q3MHD2 195 aaKnown RBP13.02□□□□□ -0.32
SHMT2-205ENST00000553474 SLC39A12Q504Y0 691 aa13.02□□□□□ -0.32
SHMT2-205ENST00000553474 TSTD2Q5T7W7 516 aa13.02□□□□□ -0.32
SHMT2-205ENST00000553474 MARC1Q5VT66 337 aa13.02□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms