RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 TAS2R40P59535 323 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 RPS21P63220 83 aaKnown RBP10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 IL9RQ01113 521 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 RAD51Q06609 339 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 IL10RBQ08334 325 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 STAT4Q14765 748 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 SUZ12Q15022 739 aaKnown RBP10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 TSR1Q2NL82 804 aaKnown RBP10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 KIAA1161Q6NSJ0 714 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 GCNT7Q6ZNI0 430 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 ABI3BPQ7Z7G0 1075 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 TC2NQ8N9U0 490 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 TSEN2Q8NCE0 465 aaKnown RBP10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 HCAR2Q8TDS4 363 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 SAP25Q8TEE9 199 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 SETD7Q8WTS6 366 aaKnown RBP10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 CTNNBL1Q8WYA6 563 aaPredicted RBP10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 BMFQ96LC9 184 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 CCDC42Q96M95 316 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 NSMCE3Q96MG7 304 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 KLF6Q99612 283 aaPredicted RBP10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 MYOCQ99972 504 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 SLC17A9Q9BYT1 436 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 RBSNQ9H1K0 784 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 DEF6Q9H4E7 631 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 FZD3Q9NPG1 666 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 RCOR3Q9P2K3 495 aaPredicted RBP10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 RALYQ9UKM9 306 aaKnown RBP10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 ANGPTL2Q9UKU9 493 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 ITM2BQ9Y287 266 aa10.4□□□□□ -0.74
CCDC88C-206ENST00000553437 CHD5Q8TDI0 1954 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 IGLON5A6NGN9 336 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 MTA2O94776 668 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 DKK1O94907 266 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 PIGNO95427 931 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 PAK4O96013 591 aaPredicted RBP10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 SPINK2P20155 84 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 AKT2P31751 481 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 MAN1A1P33908 653 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 CDH6P55285 790 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 CLDN2P57739 230 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 NSUN2Q08J23 767 aaKnown RBP eCLIP10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 SLC10A7Q0GE19 358 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 FOXC1Q12948 553 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 BNIP3Q12983 259 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 DPYSL3Q14195 570 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 RFTN1Q14699 578 aaPredicted RBP10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 HADHQ16836 314 aaKnown RBP10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 ST3GAL2Q16842 350 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 LRRC73Q5JTD7 316 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 TMCO3Q6UWJ1 677 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 KANSL1Q7Z3B3 1105 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 SRLQ86TD4 932 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 TTC7BQ86TV6 843 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 SLCO6A1Q86UG4 719 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 ZSCAN30Q86W11 494 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 ZSWIM9Q86XI8 627 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 GAS2L3Q86XJ1 694 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 GATAD2AQ86YP4 633 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 CNGA4Q8IV77 575 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 SLC35G2Q8TBE7 412 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 RHBDD1Q8TEB9 315 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 ASB12Q8WXK4 309 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 COL26A1Q96A83 441 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 KLHDC7BQ96G42 594 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 ZNF599Q96NL3 588 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 LENG8Q96PV6 779 aaPredicted RBP10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 PSKH2Q96QS6 385 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 TRIM5Q9C035 493 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 SUV39H2Q9H5I1 410 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 SP110Q9HB58 689 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 GPR27Q9NS67 375 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 TOR4AQ9NXH8 423 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 PCDHB9Q9Y5E1 797 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 HS3ST3A1Q9Y663 406 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 KNL1Q8NG31 2342 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 ADAMTS9Q9P2N4 1935 aa10.39□□□□□ -0.75
CCDC88C-206ENST00000553437 POM121BA6NF01 834 aa10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 YKT6O15498 198 aa10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 MAFKO60675 156 aa10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 MAGEC1O60732 1142 aa10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 FTH1P19P0C7X4 201 aa10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 THEGLP0DJG4 465 aa10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 CR2P20023 1033 aa10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 EPHA8P29322 1005 aaPredicted RBP10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 GRK6P43250 576 aa10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 SSR1P43307 286 aaKnown RBP10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 ARRB1P49407 418 aaPredicted RBP10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 KRT81Q14533 505 aa10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 LBRQ14739 615 aaKnown RBP10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 GRM3Q14832 879 aa10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 TCEAL1Q15170 157 aa10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 UGP2Q16851 508 aa10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 TMEM52BQ4KMG9 183 aa10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 TMCO4Q5TGY1 634 aa10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 Q6ZSR6 202 aa10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 RAB44Q7Z6P3 723 aaPredicted RBP10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 CAMK1DQ8IU85 385 aa10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 SLC22A18ASQ8N1D0 253 aa10.38□□□□□ -0.75
CCDC88C-206ENST00000553437 PGBD5Q8N414 524 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms