RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 NOS2P35228 1153 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 ADRA1BP35368 520 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 HADHAP40939 763 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 PSMD8P48556 350 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 APLP1P51693 650 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 ADARP55265 1226 aaKnown RBP5.48□□□□□ -1.53
LIMA1-212ENST00000552491 RHDQ02161 417 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 SULT2A1Q06520 285 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 ZNF484Q5JVG2 852 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 MARCH8Q5T0T0 291 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 ESRP1Q6NXG1 681 aaKnown RBP5.48□□□□□ -1.53
LIMA1-212ENST00000552491 KLHL35Q6PF15 583 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 LAYNQ6UX15 382 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 CYHR1Q6ZMK1 362 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 GADL1Q6ZQY3 521 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 ARHGAP36Q6ZRI8 547 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 HERC6Q8IVU3 1022 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 FIBCD1Q8N539 461 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 SPPL2BQ8TCT7 592 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 USP33Q8TEY7 942 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 DIS3LQ8TF46 1054 aaKnown RBP5.48□□□□□ -1.53
LIMA1-212ENST00000552491 CELF6Q96J87 481 aaKnown RBP5.48□□□□□ -1.53
LIMA1-212ENST00000552491 MAML3Q96JK9 1138 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 HSFY1Q96LI6 401 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 CCT7Q99832 543 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 TMEM79Q9BSE2 394 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 GBA3Q9H227 469 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 NXF3Q9H4D5 531 aaKnown RBP5.48□□□□□ -1.53
LIMA1-212ENST00000552491 NOL11Q9H8H0 719 aaKnown RBP5.48□□□□□ -1.53
LIMA1-212ENST00000552491 CYP4F12Q9HCS2 524 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 TRPC7Q9HCX4 862 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 TMEM30AQ9NV96 361 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 CACNA2D2Q9NY47 1150 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 CCDC167Q9P0B6 97 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 KLK14Q9P0G3 267 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 RBPJLQ9UBG7 517 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 CD300AQ9UGN4 299 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 SLC2A6Q9UGQ3 507 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 RSL24D1Q9UHA3 163 aaKnown RBP5.48□□□□□ -1.53
LIMA1-212ENST00000552491 SNX13Q9Y5W8 968 aa5.48□□□□□ -1.53
LIMA1-212ENST00000552491 PDCD11Q14690 1871 aaKnown RBP5.47□□□□□ -1.53
LIMA1-212ENST00000552491 TCRBV3S1A0A5B6 114 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 YJEFN3A6XGL0 299 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 PIRO00625 290 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 ZSCAN9O15535 394 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-212ENST00000552491 HTRA2O43464 458 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-212ENST00000552491 TIPRLO75663 272 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 ZNF189O75820 626 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-212ENST00000552491 RECQL4O94761 1208 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 ACADSBP45954 432 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 CDK9P50750 372 aaKnown RBP5.47□□□□□ -1.53
LIMA1-212ENST00000552491 PLK1P53350 603 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 TAS2R39P59534 338 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 DCTN2Q13561 401 aaKnown RBP5.47□□□□□ -1.53
LIMA1-212ENST00000552491 SLC12A1Q13621 1099 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 LAMC2Q13753 1193 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 POU6F1Q14863 301 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 ANKDD1AQ495B1 522 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 NHSL2Q5HYW2 709 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 KIAA0319Q5VV43 1072 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 REP15Q6BDI9 236 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 ELMSAN1Q6PJG2 1045 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 ALKAL1Q6UXT8 129 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 CHSY3Q70JA7 882 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 LPCAT2Q7L5N7 544 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 GPRIN1Q7Z2K8 1008 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 LRRC52Q8N7C0 313 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 TRIML2Q8N7C3 387 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 HEXDCQ8WVB3 486 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 SNRNP27Q8WVK2 155 aaKnown RBP5.47□□□□□ -1.53
LIMA1-212ENST00000552491 WNT8BQ93098 351 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 ABTB1Q969K4 478 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-212ENST00000552491 GFM2Q969S9 779 aaKnown RBP5.47□□□□□ -1.53
LIMA1-212ENST00000552491 SLC2A13Q96QE2 648 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 HAUS8Q9BT25 410 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 KIFC1Q9BW19 673 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 TRPV6Q9H1D0 765 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 SPON1Q9HCB6 807 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 FBRSL1Q9HCM7 1045 aaKnown RBP5.47□□□□□ -1.53
LIMA1-212ENST00000552491 CHCHD3Q9NX63 227 aaKnown RBP5.47□□□□□ -1.53
LIMA1-212ENST00000552491 UTP6Q9NYH9 597 aaKnown RBP5.47□□□□□ -1.53
LIMA1-212ENST00000552491 GTSE1Q9NYZ3 720 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 CACNG4Q9UBN1 327 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 SUCOQ9UBS9 1254 aaKnown RBP5.47□□□□□ -1.53
LIMA1-212ENST00000552491 EBF1Q9UH73 591 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 CNOT6Q9ULM6 557 aaKnown RBP5.47□□□□□ -1.53
LIMA1-212ENST00000552491 ANKRD6Q9Y2G4 727 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 ZNF510Q9Y2H8 683 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 ACOT9Q9Y305 439 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 FAM95CA0A1B0GW59 222 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 ZNF839A8K0R7 811 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 ERI2A8K979 691 aaKnown RBP5.47□□□□□ -1.53
LIMA1-212ENST00000552491 CYP2C9P11712 490 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 TSPAN8P19075 237 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 ATP6V1B2P21281 511 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 DNAJB1P25685 340 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 YWHAQP27348 245 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 ARCN1P48444 511 aaKnown RBP5.47□□□□□ -1.53
LIMA1-212ENST00000552491 NPY2RP49146 381 aa5.47□□□□□ -1.53
LIMA1-212ENST00000552491 ENTPD1P49961 510 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms