RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 ZNF605Q86T29 641 aa13.03□□□□□ -0.32
PTCH1-218ENST00000548945 SDR16C5Q8N3Y7 309 aa13.03□□□□□ -0.32
PTCH1-218ENST00000548945 OR6K2Q8NGY2 324 aa13.03□□□□□ -0.32
PTCH1-218ENST00000548945 NAF1Q96HR8 494 aaKnown RBP13.03□□□□□ -0.32
PTCH1-218ENST00000548945 VCPIP1Q96JH7 1222 aa13.03□□□□□ -0.32
PTCH1-218ENST00000548945 GDAP1L1Q96MZ0 367 aa13.03□□□□□ -0.32
PTCH1-218ENST00000548945 KLHL32Q96NJ5 620 aa13.03□□□□□ -0.32
PTCH1-218ENST00000548945 SLC13A1Q9BZW2 595 aa13.03□□□□□ -0.32
PTCH1-218ENST00000548945 TTYH3Q9C0H2 523 aa13.03□□□□□ -0.32
PTCH1-218ENST00000548945 CLSTN2Q9H4D0 955 aa13.03□□□□□ -0.32
PTCH1-218ENST00000548945 DNAI1Q9UI46 699 aa13.03□□□□□ -0.32
PTCH1-218ENST00000548945 GGT7Q9UJ14 662 aa13.03□□□□□ -0.32
PTCH1-218ENST00000548945 SATB2Q9UPW6 733 aa13.03□□□□□ -0.32
PTCH1-218ENST00000548945 ITM2BQ9Y287 266 aa13.03□□□□□ -0.32
PTCH1-218ENST00000548945 ENTPD2Q9Y5L3 495 aa13.03□□□□□ -0.32
PTCH1-218ENST00000548945 TMEM110-MUSTN1A8MSY1 372 aa13.02□□□□□ -0.33
PTCH1-218ENST00000548945 CDRT15L2A8MXV6 281 aa13.02□□□□□ -0.33
PTCH1-218ENST00000548945 FAM72CH0Y354 149 aa13.02□□□□□ -0.33
PTCH1-218ENST00000548945 KLK10O43240 276 aa13.02□□□□□ -0.33
PTCH1-218ENST00000548945 GCATO75600 419 aa13.02□□□□□ -0.33
PTCH1-218ENST00000548945 TM7SF2O76062 418 aa13.02□□□□□ -0.33
PTCH1-218ENST00000548945 ANXA6P08133 673 aa13.02□□□□□ -0.33
PTCH1-218ENST00000548945 GKP32189 559 aa13.02□□□□□ -0.33
PTCH1-218ENST00000548945 IGFALSP35858 605 aa13.02□□□□□ -0.33
PTCH1-218ENST00000548945 PEX5P50542 639 aa13.02□□□□□ -0.33
PTCH1-218ENST00000548945 BLKP51451 505 aa13.02□□□□□ -0.33
PTCH1-218ENST00000548945 FMO1Q01740 532 aa13.02□□□□□ -0.33
PTCH1-218ENST00000548945 VAC14Q08AM6 782 aa13.02□□□□□ -0.33
PTCH1-218ENST00000548945 CDO1Q16878 200 aa13.02□□□□□ -0.33
PTCH1-218ENST00000548945 RAB6CQ53S08 254 aa13.02□□□□□ -0.33
PTCH1-218ENST00000548945 PRRT3Q5FWE3 981 aa13.02□□□□□ -0.33
PTCH1-218ENST00000548945 TCP11X2Q5H9J9 407 aa13.02□□□□□ -0.33
PTCH1-218ENST00000548945 C3orf38Q5JPI3 329 aa13.02□□□□□ -0.33
PTCH1-218ENST00000548945 FAM72AQ5TYM5 149 aa13.02□□□□□ -0.33
PTCH1-218ENST00000548945 FAM72DQ6L9T8 149 aa13.02□□□□□ -0.33
PTCH1-218ENST00000548945 LVRNQ6Q4G3 990 aa13.02□□□□□ -0.33
PTCH1-218ENST00000548945 TTC7BQ86TV6 843 aa13.02□□□□□ -0.33
PTCH1-218ENST00000548945 FAM72BQ86X60 149 aa13.02□□□□□ -0.33
PTCH1-218ENST00000548945 SLC35F3Q8IY50 421 aa13.02□□□□□ -0.33
PTCH1-218ENST00000548945 PHACTR4Q8IZ21 702 aa13.02□□□□□ -0.33
PTCH1-218ENST00000548945 HCAR2Q8TDS4 363 aa13.02□□□□□ -0.33
PTCH1-218ENST00000548945 SLC20A1Q8WUM9 679 aa13.02□□□□□ -0.33
PTCH1-218ENST00000548945 ATXN7L3BQ96GX2 97 aa13.02□□□□□ -0.33
PTCH1-218ENST00000548945 LRRC61Q9BV99 259 aa13.02□□□□□ -0.33
PTCH1-218ENST00000548945 CPEB1Q9BZB8 566 aaKnown RBP13.02□□□□□ -0.33
PTCH1-218ENST00000548945 RAB6CQ9H0N0 254 aa13.02□□□□□ -0.33
PTCH1-218ENST00000548945 GANQ9H2C0 597 aa13.02□□□□□ -0.33
PTCH1-218ENST00000548945 CPNE5Q9HCH3 593 aa13.02□□□□□ -0.33
PTCH1-218ENST00000548945 ANKRD36A6QL64 1941 aa13.01□□□□□ -0.33
PTCH1-218ENST00000548945 ARHGEF17Q96PE2 2063 aaPredicted RBP13.01□□□□□ -0.33
PTCH1-218ENST00000548945 A0A1W2PNU3 283 aaPredicted RBP13.01□□□□□ -0.33
PTCH1-218ENST00000548945 MUSKO15146 869 aa13.01□□□□□ -0.33
PTCH1-218ENST00000548945 BUB1O43683 1085 aa13.01□□□□□ -0.33
PTCH1-218ENST00000548945 TMCC1O94876 653 aa13.01□□□□□ -0.33
PTCH1-218ENST00000548945 IGSF6O95976 241 aa13.01□□□□□ -0.33
PTCH1-218ENST00000548945 KRT3P12035 628 aa13.01□□□□□ -0.33
PTCH1-218ENST00000548945 ADKP55263 362 aaKnown RBP13.01□□□□□ -0.33
PTCH1-218ENST00000548945 HDAC4P56524 1084 aa13.01□□□□□ -0.33
PTCH1-218ENST00000548945 JAM2P57087 298 aa13.01□□□□□ -0.33
PTCH1-218ENST00000548945 YBEYP58557 167 aaPredicted RBP13.01□□□□□ -0.33
PTCH1-218ENST00000548945 PPARDQ03181 441 aa13.01□□□□□ -0.33
PTCH1-218ENST00000548945 ELP6Q0PNE2 266 aa13.01□□□□□ -0.33
PTCH1-218ENST00000548945 NFKBIBQ15653 356 aa13.01□□□□□ -0.33
PTCH1-218ENST00000548945 TAF1BQ53T94 588 aaPredicted RBP13.01□□□□□ -0.33
PTCH1-218ENST00000548945 HSP90AA4PQ58FG1 418 aa13.01□□□□□ -0.33
PTCH1-218ENST00000548945 ATXN7L2Q5T6C5 722 aaPredicted RBP13.01□□□□□ -0.33
PTCH1-218ENST00000548945 ARHGAP40Q5TG30 622 aa13.01□□□□□ -0.33
PTCH1-218ENST00000548945 ESRP1Q6NXG1 681 aaKnown RBP13.01□□□□□ -0.33
PTCH1-218ENST00000548945 CLEC14AQ86T13 490 aa13.01□□□□□ -0.33
PTCH1-218ENST00000548945 VPS36Q86VN1 386 aa13.01□□□□□ -0.33
PTCH1-218ENST00000548945 RBFAQ8N0V3 343 aa13.01□□□□□ -0.33
PTCH1-218ENST00000548945 FSTL5Q8N475 847 aaPredicted RBP13.01□□□□□ -0.33
PTCH1-218ENST00000548945 ARL14Q8N4G2 192 aa13.01□□□□□ -0.33
PTCH1-218ENST00000548945 RTL3Q8N8U3 475 aaKnown RBP13.01□□□□□ -0.33
PTCH1-218ENST00000548945 TP53I13Q8NBR0 393 aaPredicted RBP13.01□□□□□ -0.33
PTCH1-218ENST00000548945 WDR36Q8NI36 951 aaKnown RBP13.01□□□□□ -0.33
PTCH1-218ENST00000548945 JOSD2Q8TAC2 188 aa13.01□□□□□ -0.33
PTCH1-218ENST00000548945 GPT2Q8TD30 523 aa13.01□□□□□ -0.33
PTCH1-218ENST00000548945 CXorf40AQ8TE69 158 aa13.01□□□□□ -0.33
PTCH1-218ENST00000548945 FAM172AQ8WUF8 416 aa13.01□□□□□ -0.33
PTCH1-218ENST00000548945 SCG3Q8WXD2 468 aaKnown RBP13.01□□□□□ -0.33
PTCH1-218ENST00000548945 PRR11Q96HE9 360 aaPredicted RBP13.01□□□□□ -0.33
PTCH1-218ENST00000548945 SAMSN1Q9NSI8 373 aaKnown RBP13.01□□□□□ -0.33
PTCH1-218ENST00000548945 PNMA8BQ9ULN7 279 aaPredicted RBP13.01□□□□□ -0.33
PTCH1-218ENST00000548945 PADI4Q9UM07 663 aa13.01□□□□□ -0.33
PTCH1-218ENST00000548945 SCN8AQ9UQD0 1980 aa13.01□□□□□ -0.33
PTCH1-218ENST00000548945 CCDC187A0A096LP49 1063 aa13□□□□□ -0.33
PTCH1-218ENST00000548945 FAM170AA1A519 330 aa13□□□□□ -0.33
PTCH1-218ENST00000548945 WASH4PA8MWX3 477 aa13□□□□□ -0.33
PTCH1-218ENST00000548945 GOLGA6L22H0YM25 854 aa13□□□□□ -0.33
PTCH1-218ENST00000548945 NTN3O00634 580 aaPredicted RBP13□□□□□ -0.33
PTCH1-218ENST00000548945 YY2O15391 372 aa13□□□□□ -0.33
PTCH1-218ENST00000548945 MMP20O60882 483 aa13□□□□□ -0.33
PTCH1-218ENST00000548945 GFPT2O94808 682 aa13□□□□□ -0.33
PTCH1-218ENST00000548945 ALPIP09923 528 aa13□□□□□ -0.33
PTCH1-218ENST00000548945 UNGP13051 313 aaPredicted RBP13□□□□□ -0.33
PTCH1-218ENST00000548945 TIMP2P16035 220 aa13□□□□□ -0.33
PTCH1-218ENST00000548945 TSHRP16473 764 aa13□□□□□ -0.33
PTCH1-218ENST00000548945 CHRNB2P17787 502 aa13□□□□□ -0.33
PTCH1-218ENST00000548945 SOX5P35711 763 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms