RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 EIF3CLB5ME19 914 aaKnown RBP4.34□□□□□ -1.71
VPS29-205ENST00000548539 F8W810 466 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 GTPBP1O00178 669 aaKnown RBP4.34□□□□□ -1.71
VPS29-205ENST00000548539 PPP6CO00743 305 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 FIBPO43427 364 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 LIASO43766 372 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 HNRNPCL1O60812 293 aaKnown RBP4.34□□□□□ -1.71
VPS29-205ENST00000548539 TOP3BO95985 862 aaKnown RBP4.34□□□□□ -1.71
VPS29-205ENST00000548539 CYP19A1P11511 503 aaPredicted RBP4.34□□□□□ -1.71
VPS29-205ENST00000548539 RARGP13631 454 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 ATP5F1P24539 256 aaPredicted RBP4.34□□□□□ -1.71
VPS29-205ENST00000548539 PSMA4P25789 261 aaKnown RBP4.34□□□□□ -1.71
VPS29-205ENST00000548539 YWHAQP27348 245 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 TTKP33981 857 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 SLC16A2P36021 539 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 PPARGP37231 505 aaPredicted RBP4.34□□□□□ -1.71
VPS29-205ENST00000548539 HADHAP40939 763 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 GNAQP50148 359 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 CLCN5P51795 746 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 CLDN2P57739 230 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 RPS13P62277 151 aaKnown RBP4.34□□□□□ -1.71
VPS29-205ENST00000548539 OLR1P78380 273 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 GAD2Q05329 585 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 SLC18A2Q05940 514 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 FRG1Q14331 258 aaKnown RBP4.34□□□□□ -1.71
VPS29-205ENST00000548539 KCTD2Q14681 263 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 SUPT20HL1Q3ZLR7 823 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 KRTAP5-4Q6L8H1 288 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 DHX40Q8IX18 779 aaKnown RBP4.34□□□□□ -1.71
VPS29-205ENST00000548539 CADM3Q8N126 398 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 GALNT16Q8N428 558 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 SLC25A41Q8N5S1 370 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 FRMD1Q8N878 549 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 TMEM116Q8NCL8 245 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 OR4N2Q8NGD1 307 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 BCAS4Q8TDM0 211 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 WIPF2Q8TF74 440 aaPredicted RBP4.34□□□□□ -1.71
VPS29-205ENST00000548539 SMARCE1Q969G3 411 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 PABPC5Q96DU9 382 aaKnown RBP4.34□□□□□ -1.71
VPS29-205ENST00000548539 BBS4Q96RK4 519 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 LHPPQ9H008 270 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 SPRTNQ9H040 489 aaPredicted RBP4.34□□□□□ -1.71
VPS29-205ENST00000548539 VPS33BQ9H267 617 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 MUC13Q9H3R2 512 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 SCPEP1Q9HB40 452 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 SPAG4Q9NPE6 437 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 INTS6Q9UL03 887 aaKnown RBP4.34□□□□□ -1.71
VPS29-205ENST00000548539 A4GNTQ9UNA3 340 aa4.34□□□□□ -1.71
VPS29-205ENST00000548539 KIR2DS5A0A0G2JLQ3 304 aa4.33□□□□□ -1.72
VPS29-205ENST00000548539 TYW5A2RUC4 315 aaKnown RBP4.33□□□□□ -1.72
VPS29-205ENST00000548539 MYMKA6NI61 221 aa4.33□□□□□ -1.72
VPS29-205ENST00000548539 LRRC53A6NM62 1247 aa4.33□□□□□ -1.72
VPS29-205ENST00000548539 PTGES3LE9PB15 166 aa4.33□□□□□ -1.72
VPS29-205ENST00000548539 KIR2DS3K7RE56 304 aa4.33□□□□□ -1.72
VPS29-205ENST00000548539 ATP2C2O75185 946 aa4.33□□□□□ -1.72
VPS29-205ENST00000548539 GJB3O75712 270 aa4.33□□□□□ -1.72
VPS29-205ENST00000548539 LCKP06239 509 aa4.33□□□□□ -1.72
VPS29-205ENST00000548539 HEXAP06865 529 aa4.33□□□□□ -1.72
VPS29-205ENST00000548539 CHRNB1P11230 501 aa4.33□□□□□ -1.72
VPS29-205ENST00000548539 UNGP13051 313 aaPredicted RBP4.33□□□□□ -1.72
VPS29-205ENST00000548539 ALOX12P18054 663 aa4.33□□□□□ -1.72
VPS29-205ENST00000548539 HOXD9P28356 352 aaPredicted RBP4.33□□□□□ -1.72
VPS29-205ENST00000548539 RFC1P35251 1148 aaPredicted RBP4.33□□□□□ -1.72
VPS29-205ENST00000548539 HOXD13P35453 343 aa4.33□□□□□ -1.72
VPS29-205ENST00000548539 ACTN2P35609 894 aa4.33□□□□□ -1.72
VPS29-205ENST00000548539 PKP1Q13835 747 aa4.33□□□□□ -1.72
VPS29-205ENST00000548539 RNPS1Q15287 305 aaKnown RBP4.33□□□□□ -1.72
VPS29-205ENST00000548539 CCNG2Q16589 344 aa4.33□□□□□ -1.72
VPS29-205ENST00000548539 GSTA3Q16772 222 aa4.33□□□□□ -1.72
VPS29-205ENST00000548539 SMTNL2Q2TAL5 461 aa4.33□□□□□ -1.72
VPS29-205ENST00000548539 TTC39AQ5SRH9 613 aa4.33□□□□□ -1.72
VPS29-205ENST00000548539 ATG9BQ674R7 924 aa4.33□□□□□ -1.72
VPS29-205ENST00000548539 ISM2Q6H9L7 571 aa4.33□□□□□ -1.72
VPS29-205ENST00000548539 CES5AQ6NT32 575 aa4.33□□□□□ -1.72
VPS29-205ENST00000548539 SLC2A7Q6PXP3 512 aa4.33□□□□□ -1.72
VPS29-205ENST00000548539 WDTC1Q8N5D0 677 aa4.33□□□□□ -1.72
VPS29-205ENST00000548539 HORMAD2Q8N7B1 307 aa4.33□□□□□ -1.72
VPS29-205ENST00000548539 GTF3C6Q969F1 213 aa4.33□□□□□ -1.72
VPS29-205ENST00000548539 RSRC1Q96IZ7 334 aaKnown RBP4.33□□□□□ -1.72
VPS29-205ENST00000548539 CLMNQ96JQ2 1002 aa4.33□□□□□ -1.72
VPS29-205ENST00000548539 NUDT16L1Q9BRJ7 211 aaKnown RBP4.33□□□□□ -1.72
VPS29-205ENST00000548539 POLR1BQ9H9Y6 1135 aa4.33□□□□□ -1.72
VPS29-205ENST00000548539 PNRC2Q9NPJ4 139 aaKnown RBP4.33□□□□□ -1.72
VPS29-205ENST00000548539 THSD1Q9NS62 852 aa4.33□□□□□ -1.72
VPS29-205ENST00000548539 TUBA8Q9NY65 449 aaPredicted RBP4.33□□□□□ -1.72
VPS29-205ENST00000548539 ZNF215Q9UL58 517 aaPredicted RBP4.33□□□□□ -1.72
VPS29-205ENST00000548539 RUSC2Q8N2Y8 1516 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 RSF1Q96T23 1441 aaPredicted RBP4.32□□□□□ -1.72
VPS29-205ENST00000548539 TRBV5-3A0A0A0MS03 114 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 C11orf97A0A1B0GVM6 126 aaPredicted RBP4.32□□□□□ -1.72
VPS29-205ENST00000548539 LIPT2A6NK58 231 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 A6NNC1 897 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 KCNU1A8MYU2 1149 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 NPIPB11E5RHQ5 1161 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 RNMTO43148 476 aaKnown RBP4.32□□□□□ -1.72
VPS29-205ENST00000548539 EIF2S1P05198 315 aaKnown RBP4.32□□□□□ -1.72
VPS29-205ENST00000548539 CTSAP10619 480 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 CTPS1P17812 591 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 TNFSF8P32971 234 aa4.32□□□□□ -1.72
VPS29-205ENST00000548539 HDAC4P56524 1084 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms