RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 MROH6A6NGR9 719 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 BIRC5O15392 142 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 RFPL1O75677 317 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 ZMPSTE24O75844 475 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 TMCC1O94876 653 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 VAPBO95292 243 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 APOA4P06727 396 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 CREB1P16220 341 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 EPCAMP16422 314 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 MAGEA10P43363 369 aaPredicted RBP13.56□□□□□ -0.24
PTCH1-215ENST00000547672 KPNA2P52292 529 aaKnown RBP13.56□□□□□ -0.24
PTCH1-215ENST00000547672 SEC24CP53992 1094 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 PRAMEP78395 509 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 RAD51Q06609 339 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 CAMK1Q14012 370 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 SHHQ15465 462 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 DUSP6Q16828 381 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 ATG16L1Q676U5 607 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 MRNIPQ6NTE8 343 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 LVRNQ6Q4G3 990 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 CES3Q6UWW8 571 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 SH2D5Q6ZV89 423 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 KDELC2Q7Z4H8 507 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 SRLQ86TD4 932 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 SMG7Q92540 1137 aaKnown RBP13.56□□□□□ -0.24
PTCH1-215ENST00000547672 WBP2Q969T9 261 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 RMDN1Q96DB5 314 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 TSPAN17Q96FV3 270 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 SERAC1Q96JX3 654 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 PITPNM3Q9BZ71 974 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 RHOJQ9H4E5 214 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 NOD2Q9HC29 1040 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 IARS2Q9NSE4 1012 aaKnown RBP13.56□□□□□ -0.24
PTCH1-215ENST00000547672 TREX1Q9NSU2 369 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 ABCB8Q9NUT2 735 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 SLC25A13Q9UJS0 675 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 VPS9D1Q9Y2B5 631 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 PLLPQ9Y342 182 aa13.56□□□□□ -0.24
PTCH1-215ENST00000547672 TCP11X1B4DZS4 312 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 RFPL2O75678 378 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 IGSF6O95976 241 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 CR2P20023 1033 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 DRD4P21917 467 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 NFKBIAP25963 317 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 CRABP2P29373 138 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 ALDH3A1P30838 453 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 IRS1P35568 1242 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 NNMTP40261 264 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 CSKP41240 450 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 SGSHP51688 502 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 NEK3P51956 506 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 SLC12A2P55011 1212 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 OLIG2Q13516 323 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 MPP2Q14168 576 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 LRRC14Q15048 493 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 TAF1AQ15573 450 aaPredicted RBP13.55□□□□□ -0.24
PTCH1-215ENST00000547672 CNGA3Q16281 694 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 CCDC153Q494R4 210 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 TAF1BQ53T94 588 aaPredicted RBP13.55□□□□□ -0.24
PTCH1-215ENST00000547672 PRSS36Q5K4E3 855 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 GRASPQ7Z6J2 395 aaPredicted RBP13.55□□□□□ -0.24
PTCH1-215ENST00000547672 CCDC197Q8NCU1 140 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 TTC16Q8NEE8 873 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 GDAP1Q8TB36 358 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 IRF7Q92985 503 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 ISL2Q96A47 359 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 E2F7Q96AV8 911 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 ALG14Q96F25 216 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 ZNF419Q96HQ0 510 aaPredicted RBP13.55□□□□□ -0.24
PTCH1-215ENST00000547672 TCF12Q99081 682 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 CEP44Q9C0F1 390 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 MFSD1Q9H3U5 465 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 SLC28A3Q9HAS3 691 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 SPHK2Q9NRA0 654 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 HCFC1R1Q9NWW0 138 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.55□□□□□ -0.24
PTCH1-215ENST00000547672 VPS51Q9UID3 782 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 HCFC2Q9Y5Z7 792 aa13.55□□□□□ -0.24
PTCH1-215ENST00000547672 GOLGA8RI6L899 631 aa13.54□□□□□ -0.24
PTCH1-215ENST00000547672 SOCS5O75159 536 aa13.54□□□□□ -0.24
PTCH1-215ENST00000547672 KIAA0754O94854 1291 aa13.54□□□□□ -0.24
PTCH1-215ENST00000547672 GLP2RO95838 553 aa13.54□□□□□ -0.24
PTCH1-215ENST00000547672 PENKP01210 267 aaPredicted RBP13.54□□□□□ -0.24
PTCH1-215ENST00000547672 ATXN1LP0C7T5 689 aaKnown RBP13.54□□□□□ -0.24
PTCH1-215ENST00000547672 MYOGP15173 224 aa13.54□□□□□ -0.24
PTCH1-215ENST00000547672 GJA1P17302 382 aa13.54□□□□□ -0.24
PTCH1-215ENST00000547672 MZF1P28698 734 aaPredicted RBP13.54□□□□□ -0.24
PTCH1-215ENST00000547672 PPARGP37231 505 aaPredicted RBP13.54□□□□□ -0.24
PTCH1-215ENST00000547672 ARCN1P48444 511 aaKnown RBP13.54□□□□□ -0.24
PTCH1-215ENST00000547672 EPHB1P54762 984 aa13.54□□□□□ -0.24
PTCH1-215ENST00000547672 WDR4P57081 412 aaKnown RBP13.54□□□□□ -0.24
PTCH1-215ENST00000547672 SNRPD1P62314 119 aaKnown RBP13.54□□□□□ -0.24
PTCH1-215ENST00000547672 ARF5P84085 180 aa13.54□□□□□ -0.24
PTCH1-215ENST00000547672 ZXDBP98169 803 aa13.54□□□□□ -0.24
PTCH1-215ENST00000547672 POU4F1Q01851 419 aa13.54□□□□□ -0.24
PTCH1-215ENST00000547672 ACVR1Q04771 509 aa13.54□□□□□ -0.24
PTCH1-215ENST00000547672 PLEKHG6Q3KR16 790 aa13.54□□□□□ -0.24
PTCH1-215ENST00000547672 C9orf50Q5SZB4 431 aa13.54□□□□□ -0.24
PTCH1-215ENST00000547672 FAM182AQ5T1J6 154 aa13.54□□□□□ -0.24
PTCH1-215ENST00000547672 FSTL4Q6MZW2 842 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms