RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 DKK3Q9UBP4 350 aa13.51□□□□□ -0.25
CPSF6-204ENST00000547486 PCSK1NQ9UHG2 260 aa13.51□□□□□ -0.25
CPSF6-204ENST00000547486 IPO11Q9UI26 975 aaKnown RBP13.51□□□□□ -0.25
CPSF6-204ENST00000547486 CLCA2Q9UQC9 943 aa13.51□□□□□ -0.25
CPSF6-204ENST00000547486 LOC400499M0QZD8 3231 aa13.51□□□□□ -0.25
CPSF6-204ENST00000547486 ITPR1Q14643 2758 aa13.51□□□□□ -0.25
CPSF6-204ENST00000547486 APC2O95996 2303 aa13.51□□□□□ -0.25
CPSF6-204ENST00000547486 CHD5Q8TDI0 1954 aa13.51□□□□□ -0.25
CPSF6-204ENST00000547486 FAM208BQ5VWN6 2430 aa13.5□□□□□ -0.25
CPSF6-204ENST00000547486 KNTC1P50748 2209 aa13.5□□□□□ -0.25
CPSF6-204ENST00000547486 DDX3XO00571 662 aaKnown RBP eCLIP13.5□□□□□ -0.25
CPSF6-204ENST00000547486 FGF10O15520 208 aaPredicted RBP13.5□□□□□ -0.25
CPSF6-204ENST00000547486 TLX3O43711 291 aaPredicted RBP13.5□□□□□ -0.25
CPSF6-204ENST00000547486 IGSF6O95976 241 aa13.5□□□□□ -0.25
CPSF6-204ENST00000547486 MT-CO3P00414 261 aa13.5□□□□□ -0.25
CPSF6-204ENST00000547486 SKILP12757 684 aa13.5□□□□□ -0.25
CPSF6-204ENST00000547486 JUNDP17535 347 aa13.5□□□□□ -0.25
CPSF6-204ENST00000547486 PSMA2P25787 234 aa13.5□□□□□ -0.25
CPSF6-204ENST00000547486 IGFALSP35858 605 aa13.5□□□□□ -0.25
CPSF6-204ENST00000547486 RGRP47804 291 aa13.5□□□□□ -0.25
CPSF6-204ENST00000547486 PAPOLAP51003 745 aaKnown RBP13.5□□□□□ -0.25
CPSF6-204ENST00000547486 TPI1P60174 286 aa13.5□□□□□ -0.25
CPSF6-204ENST00000547486 HNRNPKP61978 463 aaKnown RBP eCLIP13.5□□□□□ -0.25
CPSF6-204ENST00000547486 E2F1Q01094 437 aa13.5□□□□□ -0.25
CPSF6-204ENST00000547486 SEMG2Q02383 582 aa13.5□□□□□ -0.25
CPSF6-204ENST00000547486 RAD51Q06609 339 aa13.5□□□□□ -0.25
CPSF6-204ENST00000547486 ASIC2Q16515 512 aa13.5□□□□□ -0.25
CPSF6-204ENST00000547486 AFMIDQ63HM1 303 aa13.5□□□□□ -0.25
CPSF6-204ENST00000547486 CYP4V2Q6ZWL3 525 aaPredicted RBP13.5□□□□□ -0.25
CPSF6-204ENST00000547486 VPS36Q86VN1 386 aa13.5□□□□□ -0.25
CPSF6-204ENST00000547486 ZSCAN30Q86W11 494 aa13.5□□□□□ -0.25
CPSF6-204ENST00000547486 PARGQ86W56 976 aa13.5□□□□□ -0.25
CPSF6-204ENST00000547486 CACTIN-AS1Q8N1I8 211 aa13.5□□□□□ -0.25
CPSF6-204ENST00000547486 ARHGEF26Q96DR7 871 aa13.5□□□□□ -0.25
CPSF6-204ENST00000547486 WRAP53Q9BUR4 548 aaKnown RBP13.5□□□□□ -0.25
CPSF6-204ENST00000547486 CPEB1Q9BZB8 566 aaKnown RBP13.5□□□□□ -0.25
CPSF6-204ENST00000547486 DHX35Q9H5Z1 703 aaKnown RBP13.5□□□□□ -0.25
CPSF6-204ENST00000547486 UBA2Q9UBT2 640 aaPredicted RBP13.5□□□□□ -0.25
CPSF6-204ENST00000547486 AP4E1Q9UPM8 1137 aa13.5□□□□□ -0.25
CPSF6-204ENST00000547486 AK5Q9Y6K8 562 aa13.5□□□□□ -0.25
CPSF6-204ENST00000547486 TRPM6Q9BX84 2022 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 A0A1B0GTH6 734 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 NEMP2A6NFY4 417 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 SMTNL1A8MU46 457 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 EEF2KO00418 725 aaKnown RBP13.49□□□□□ -0.25
CPSF6-204ENST00000547486 OPA1O60313 960 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 PRAMEF11O60813 436 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 GCATO75600 419 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 TM7SF2O76062 418 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 MIPP30301 263 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 HTR7P34969 479 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 NDST2P52849 883 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 NR1I3Q14994 352 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 IQCB1Q15051 598 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 KLHL40Q2TBA0 621 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 TMEM52BQ4KMG9 183 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 HS1BP3Q53T59 392 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 ERMARDQ5T6L9 678 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 CDCP2Q5VXM1 449 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 ARHGAP36Q6ZRI8 547 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 NYAP1Q6ZVC0 841 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 ZSWIM9Q86XI8 627 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 ARHGAP12Q8IWW6 846 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 TP53INP2Q8IXH6 220 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 RBFAQ8N0V3 343 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 TP53I13Q8NBR0 393 aaPredicted RBP13.49□□□□□ -0.25
CPSF6-204ENST00000547486 DENND6BQ8NEG7 585 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 LMX1AQ8TE12 382 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 CXorf40AQ8TE69 158 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 NXPE2Q96DL1 559 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 DCBLD2Q96PD2 775 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 KCTD15Q96SI1 283 aaPredicted RBP13.49□□□□□ -0.25
CPSF6-204ENST00000547486 SNRNP25Q9BV90 132 aaKnown RBP13.49□□□□□ -0.25
CPSF6-204ENST00000547486 SUV39H2Q9H5I1 410 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 COQ6Q9Y2Z9 468 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 PCDHB1Q9Y5F3 818 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 CSNK1G3Q9Y6M4 447 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 URB1O60287 2271 aaKnown RBP13.49□□□□□ -0.25
CPSF6-204ENST00000547486 ADAMTS20P59510 1910 aa13.49□□□□□ -0.25
CPSF6-204ENST00000547486 CACNA1GO43497 2377 aa13.48□□□□□ -0.25
CPSF6-204ENST00000547486 A0A1W2PQC6 194 aa13.48□□□□□ -0.25
CPSF6-204ENST00000547486 AQP9O43315 295 aa13.48□□□□□ -0.25
CPSF6-204ENST00000547486 ALPPL2P10696 532 aa13.48□□□□□ -0.25
CPSF6-204ENST00000547486 GZMAP12544 262 aa13.48□□□□□ -0.25
CPSF6-204ENST00000547486 ERCC2P18074 760 aa13.48□□□□□ -0.25
CPSF6-204ENST00000547486 ITPKBP27987 946 aa13.48□□□□□ -0.25
CPSF6-204ENST00000547486 EIF4A3P38919 411 aaKnown RBP13.48□□□□□ -0.25
CPSF6-204ENST00000547486 EIF2S3P41091 472 aaKnown RBP13.48□□□□□ -0.25
CPSF6-204ENST00000547486 PRKCIP41743 596 aa13.48□□□□□ -0.25
CPSF6-204ENST00000547486 ZNF165P49910 485 aa13.48□□□□□ -0.25
CPSF6-204ENST00000547486 C1orf61Q13536 156 aa13.48□□□□□ -0.25
CPSF6-204ENST00000547486 UGP2Q16851 508 aa13.48□□□□□ -0.25
CPSF6-204ENST00000547486 WSCD2Q2TBF2 565 aa13.48□□□□□ -0.25
CPSF6-204ENST00000547486 DEFB133Q30KQ1 61 aa13.48□□□□□ -0.25
CPSF6-204ENST00000547486 FILIP1LQ4L180 1135 aa13.48□□□□□ -0.25
CPSF6-204ENST00000547486 SOWAHCQ53LP3 525 aaPredicted RBP13.48□□□□□ -0.25
CPSF6-204ENST00000547486 PPP1R2P3Q6NXS1 205 aa13.48□□□□□ -0.25
CPSF6-204ENST00000547486 CAVIN1Q6NZI2 390 aaKnown RBP13.48□□□□□ -0.25
CPSF6-204ENST00000547486 RFX8Q6ZV50 586 aa13.48□□□□□ -0.25
CPSF6-204ENST00000547486 CAMK1DQ8IU85 385 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms