RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 RNF103O00237 685 aa13.91□□□□□ -0.18
PTCH1-213ENST00000546820 PGRMC1O00264 195 aaKnown RBP13.91□□□□□ -0.18
PTCH1-213ENST00000546820 LIASO43766 372 aa13.91□□□□□ -0.18
PTCH1-213ENST00000546820 HLA-DQB2P05538 268 aa13.91□□□□□ -0.18
PTCH1-213ENST00000546820 TBC1D3HP0C7X1 549 aa13.91□□□□□ -0.18
PTCH1-213ENST00000546820 DRD3P35462 400 aa13.91□□□□□ -0.18
PTCH1-213ENST00000546820 WASHC5Q12768 1159 aa13.91□□□□□ -0.18
PTCH1-213ENST00000546820 TBC1D3GQ6DHY5 549 aa13.91□□□□□ -0.18
PTCH1-213ENST00000546820 ITPRIPL1Q6GPH6 555 aa13.91□□□□□ -0.18
PTCH1-213ENST00000546820 TBC1D3CQ6IPX1 549 aa13.91□□□□□ -0.18
PTCH1-213ENST00000546820 PRR23BQ6ZRT6 265 aa13.91□□□□□ -0.18
PTCH1-213ENST00000546820 TBC1D3Q8IZP1 549 aaPredicted RBP13.91□□□□□ -0.18
PTCH1-213ENST00000546820 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.91□□□□□ -0.18
PTCH1-213ENST00000546820 FAM160A2Q8N612 972 aaPredicted RBP13.91□□□□□ -0.18
PTCH1-213ENST00000546820 CNTD1Q8N815 330 aa13.91□□□□□ -0.18
PTCH1-213ENST00000546820 CADM4Q8NFZ8 388 aa13.91□□□□□ -0.18
PTCH1-213ENST00000546820 SLC35B2Q8TB61 432 aa13.91□□□□□ -0.18
PTCH1-213ENST00000546820 ACTRT1Q8TDG2 376 aa13.91□□□□□ -0.18
PTCH1-213ENST00000546820 C1orf54Q8WWF1 131 aa13.91□□□□□ -0.18
PTCH1-213ENST00000546820 ARRDC3Q96B67 414 aa13.91□□□□□ -0.18
PTCH1-213ENST00000546820 ZC3H10Q96K80 434 aaKnown RBP13.91□□□□□ -0.18
PTCH1-213ENST00000546820 PPP1R2P1Q96PQ5 205 aa13.91□□□□□ -0.18
PTCH1-213ENST00000546820 SLC25A51Q9H1U9 297 aa13.91□□□□□ -0.18
PTCH1-213ENST00000546820 GLOD4Q9HC38 313 aa13.91□□□□□ -0.18
PTCH1-213ENST00000546820 RNF14Q9UBS8 474 aa13.91□□□□□ -0.18
PTCH1-213ENST00000546820 TPX2Q9ULW0 747 aaKnown RBP13.91□□□□□ -0.18
PTCH1-213ENST00000546820 DRG1Q9Y295 367 aaKnown RBP13.91□□□□□ -0.18
PTCH1-213ENST00000546820 R3HDM2Q9Y2K5 976 aaKnown RBP13.91□□□□□ -0.18
PTCH1-213ENST00000546820 GOLGA6L10A0A0M3HER8 536 aa13.9□□□□□ -0.18
PTCH1-213ENST00000546820 TTC24A2A3L6 582 aaPredicted RBP13.9□□□□□ -0.18
PTCH1-213ENST00000546820 NEMP1O14524 444 aa13.9□□□□□ -0.18
PTCH1-213ENST00000546820 PIGNO95427 931 aa13.9□□□□□ -0.18
PTCH1-213ENST00000546820 SEMA4FO95754 770 aa13.9□□□□□ -0.18
PTCH1-213ENST00000546820 ADRB3P13945 408 aa13.9□□□□□ -0.18
PTCH1-213ENST00000546820 ACSL1P33121 698 aa13.9□□□□□ -0.18
PTCH1-213ENST00000546820 ACTN2P35609 894 aa13.9□□□□□ -0.18
PTCH1-213ENST00000546820 PAFAH1B1P43034 410 aa13.9□□□□□ -0.18
PTCH1-213ENST00000546820 TNNT3P45378 269 aaPredicted RBP13.9□□□□□ -0.18
PTCH1-213ENST00000546820 DSC2Q02487 901 aa13.9□□□□□ -0.18
PTCH1-213ENST00000546820 SRSF5Q13243 272 aaKnown RBP13.9□□□□□ -0.18
PTCH1-213ENST00000546820 PRPSAP1Q14558 356 aa13.9□□□□□ -0.18
PTCH1-213ENST00000546820 SYCP2LQ5T4T6 812 aa13.9□□□□□ -0.18
PTCH1-213ENST00000546820 ARMC12Q5T9G4 340 aa13.9□□□□□ -0.18
PTCH1-213ENST00000546820 CCDC70Q6NSX1 233 aa13.9□□□□□ -0.18
PTCH1-213ENST00000546820 NEK5Q6P3R8 708 aa13.9□□□□□ -0.18
PTCH1-213ENST00000546820 FRMD1Q8N878 549 aa13.9□□□□□ -0.18
PTCH1-213ENST00000546820 OR2T34Q8NGX1 318 aa13.9□□□□□ -0.18
PTCH1-213ENST00000546820 COG1Q8WTW3 980 aa13.9□□□□□ -0.18
PTCH1-213ENST00000546820 PDCD6IPQ8WUM4 868 aaKnown RBP13.9□□□□□ -0.18
PTCH1-213ENST00000546820 NKD2Q969F2 451 aaPredicted RBP13.9□□□□□ -0.18
PTCH1-213ENST00000546820 IMP4Q96G21 291 aaKnown RBP13.9□□□□□ -0.18
PTCH1-213ENST00000546820 MS4A14Q96JA4 679 aa13.9□□□□□ -0.18
PTCH1-213ENST00000546820 GPR174Q9BXC1 333 aa13.9□□□□□ -0.18
PTCH1-213ENST00000546820 CEP41Q9BYV8 373 aa13.9□□□□□ -0.18
PTCH1-213ENST00000546820 DUSP15Q9H1R2 295 aaPredicted RBP13.9□□□□□ -0.18
PTCH1-213ENST00000546820 EPC1Q9H2F5 836 aa13.9□□□□□ -0.18
PTCH1-213ENST00000546820 C10orf88Q9H8K7 445 aa13.9□□□□□ -0.18
PTCH1-213ENST00000546820 USP29Q9HBJ7 922 aa13.9□□□□□ -0.18
PTCH1-213ENST00000546820 PREBQ9HCU5 417 aa13.9□□□□□ -0.18
PTCH1-213ENST00000546820 FEZ2Q9UHY8 353 aaPredicted RBP13.9□□□□□ -0.18
PTCH1-213ENST00000546820 MBD1Q9UIS9 605 aaPredicted RBP13.9□□□□□ -0.18
PTCH1-213ENST00000546820 DNPEPQ9ULA0 475 aa13.9□□□□□ -0.18
PTCH1-213ENST00000546820 PCDHGC4Q9Y5F7 938 aa13.9□□□□□ -0.18
PTCH1-213ENST00000546820 C5orf60A6NFR6 353 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 FAM47DPA6NHR8 397 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 KIF2AO00139 706 aaPredicted RBP13.89□□□□□ -0.19
PTCH1-213ENST00000546820 TRAFD1O14545 582 aaPredicted RBP13.89□□□□□ -0.19
PTCH1-213ENST00000546820 HTRA2O43464 458 aaPredicted RBP13.89□□□□□ -0.19
PTCH1-213ENST00000546820 PLRG1O43660 514 aaKnown RBP13.89□□□□□ -0.19
PTCH1-213ENST00000546820 OPHN1O60890 802 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 ITGAVP06756 1048 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 TIMP2P16035 220 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 NBL1P41271 181 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 CD86P42081 329 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 METAP1P53582 386 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 LMNB2Q03252 620 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 NIPAL4Q0D2K0 466 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 ELP6Q0PNE2 266 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 SNX1Q13596 522 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 SLC14A2Q15849 920 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 UGP2Q16851 508 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 PLK5Q496M5 336 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 ANKRD20A2Q5SQ80 823 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 PIP5KL1Q5T9C9 394 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 ANKRD20A1Q5TYW2 823 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 AGBL4Q5VU57 503 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 ANKRD20A3Q5VUR7 823 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 ERAP2Q6P179 960 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 DRICH1Q6PGQ1 229 aaPredicted RBP13.89□□□□□ -0.19
PTCH1-213ENST00000546820 SYT10Q6XYQ8 523 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 PARS2Q7L3T8 475 aaKnown RBP13.89□□□□□ -0.19
PTCH1-213ENST00000546820 ZSCAN30Q86W11 494 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 ZNF567Q8N184 647 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 FAM71DQ8N9W8 422 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 ARRDC2Q8TBH0 407 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 ATG4AQ8WYN0 398 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 FAM131CQ96AQ9 280 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 LRRC45Q96CN5 670 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 ECHDC3Q96DC8 303 aa13.89□□□□□ -0.19
PTCH1-213ENST00000546820 ZNF419Q96HQ0 510 aaPredicted RBP13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms