RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 NPWQ8N729 165 aa14.8□□□□□ -0.04
HOXC11-202ENST00000546378 RBBP8Q99708 897 aa14.8□□□□□ -0.04
HOXC11-202ENST00000546378 SOCS2O14508 198 aa14.8□□□□□ -0.04
HOXC11-202ENST00000546378 LINC00032P0C843 101 aa14.8□□□□□ -0.04
HOXC11-202ENST00000546378 TNFAIP2Q03169 654 aa14.8□□□□□ -0.04
HOXC11-202ENST00000546378 TBCCQ15814 346 aa14.8□□□□□ -0.04
HOXC11-202ENST00000546378 TAPT1Q6NXT6 567 aa14.8□□□□□ -0.04
HOXC11-202ENST00000546378 SHCBP1Q8NEM2 672 aa14.8□□□□□ -0.04
HOXC11-202ENST00000546378 TUBGCP3Q96CW5 907 aa14.8□□□□□ -0.04
HOXC11-202ENST00000546378 RTKNQ9BST9 563 aa14.8□□□□□ -0.04
HOXC11-202ENST00000546378 ING2Q9H160 280 aa14.8□□□□□ -0.04
HOXC11-202ENST00000546378 PLEKHA5Q9HAU0 1116 aa14.8□□□□□ -0.04
HOXC11-202ENST00000546378 TRNAU1APQ9NX07 287 aaKnown RBP14.8□□□□□ -0.04
HOXC11-202ENST00000546378 DDX43Q9NXZ2 648 aaKnown RBP14.8□□□□□ -0.04
HOXC11-202ENST00000546378 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.8□□□□□ -0.04
HOXC11-202ENST00000546378 CNTN6Q9UQ52 1028 aa14.8□□□□□ -0.04
HOXC11-202ENST00000546378 SMIM31A0A1B0GVY4 71 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 YJEFN3A6XGL0 299 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 PSMD12O00232 456 aaPredicted RBP14.79□□□□□ -0.04
HOXC11-202ENST00000546378 FAM189A1O60320 539 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 RECQL4O94761 1208 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 STMN1P16949 149 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 ZNF182P17025 639 aaPredicted RBP14.79□□□□□ -0.04
HOXC11-202ENST00000546378 PTPN7P35236 360 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 FPGSQ05932 587 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 GPR152Q8TDT2 470 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 FNIP1Q8TF40 1166 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 BHMTQ93088 406 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 MTMR10Q9NXD2 777 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 MYRFQ9Y2G1 1151 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 VCANP13611 3396 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 ENDOD1O94919 500 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 SETSIPP0DME0 302 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 AP3M2P53677 418 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 STX1BP61266 288 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 YWHAHQ04917 246 aaPredicted RBP14.79□□□□□ -0.04
HOXC11-202ENST00000546378 ARHGAP1Q07960 439 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 CYP51A1Q16850 503 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 WSCD1Q658N2 575 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 TWF2Q6IBS0 349 aaKnown RBP14.79□□□□□ -0.04
HOXC11-202ENST00000546378 TMEM214Q6NUQ4 689 aaKnown RBP14.79□□□□□ -0.04
HOXC11-202ENST00000546378 LCLAT1Q6UWP7 414 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 HEXDCQ8WVB3 486 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 FAM167AQ96KS9 214 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 TMEM74Q96NL1 305 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 UPF3AQ9H1J1 476 aaKnown RBP14.79□□□□□ -0.04
HOXC11-202ENST00000546378 TMEM134Q9H6X4 195 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 NCKIPSDQ9NZQ3 722 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 FAM50BQ9Y247 325 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 TTC3P53804 2025 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 MEIS3P2A8K0S8 358 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 BDNFP23560 247 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 C1QTNF8P60827 252 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 CRHR2Q13324 411 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 FGD3Q5JSP0 725 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 CPNE1Q99829 537 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 ZNF670Q9BS34 389 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 ARHGAP39Q9C0H5 1083 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 TKTL2Q9H0I9 626 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 MIR1-1HGQ9H1L0 117 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 SEMA4BQ9NPR2 832 aaPredicted RBP14.79□□□□□ -0.04
HOXC11-202ENST00000546378 RLFQ13129 1914 aa14.79□□□□□ -0.04
HOXC11-202ENST00000546378 HEATR9A2RTY3 570 aa14.78□□□□□ -0.04
HOXC11-202ENST00000546378 CASTOR2A6NHX0 329 aa14.78□□□□□ -0.04
HOXC11-202ENST00000546378 B4GALT4O60513 344 aa14.78□□□□□ -0.04
HOXC11-202ENST00000546378 MYL3P08590 195 aa14.78□□□□□ -0.04
HOXC11-202ENST00000546378 GFAPP14136 432 aa14.78□□□□□ -0.04
HOXC11-202ENST00000546378 PTPN3P26045 913 aa14.78□□□□□ -0.04
HOXC11-202ENST00000546378 ARPP19P56211 112 aa14.78□□□□□ -0.04
HOXC11-202ENST00000546378 DGCR6Q14129 220 aa14.78□□□□□ -0.04
HOXC11-202ENST00000546378 LAPTM4AQ15012 233 aa14.78□□□□□ -0.04
HOXC11-202ENST00000546378 ZNF423Q2M1K9 1284 aa14.78□□□□□ -0.04
HOXC11-202ENST00000546378 KLC3Q6P597 504 aa14.78□□□□□ -0.04
HOXC11-202ENST00000546378 PGM2L1Q6PCE3 622 aa14.78□□□□□ -0.04
HOXC11-202ENST00000546378 CCDC81Q6ZN84 652 aa14.78□□□□□ -0.04
HOXC11-202ENST00000546378 TXNDC5Q8NBS9 432 aaKnown RBP14.78□□□□□ -0.04
HOXC11-202ENST00000546378 SGCDQ92629 289 aa14.78□□□□□ -0.04
HOXC11-202ENST00000546378 C2orf40Q9H1Z8 148 aa14.78□□□□□ -0.04
HOXC11-202ENST00000546378 RNF11Q9Y3C5 154 aa14.78□□□□□ -0.04
HOXC11-202ENST00000546378 UNC80Q8N2C7 3258 aa14.78□□□□□ -0.04
HOXC11-202ENST00000546378 ANKRD33BA6NCL7 494 aa14.78□□□□□ -0.04
HOXC11-202ENST00000546378 DDHD2O94830 711 aa14.78□□□□□ -0.04
HOXC11-202ENST00000546378 CPB1P15086 417 aa14.78□□□□□ -0.04
HOXC11-202ENST00000546378 CDH2P19022 906 aaPredicted RBP14.78□□□□□ -0.04
HOXC11-202ENST00000546378 AFF1P51825 1210 aaKnown RBP14.78□□□□□ -0.04
HOXC11-202ENST00000546378 IST1P53990 364 aa14.78□□□□□ -0.04
HOXC11-202ENST00000546378 SGO1Q5FBB7 561 aa14.78□□□□□ -0.04
HOXC11-202ENST00000546378 RABL3Q5HYI8 236 aa14.78□□□□□ -0.04
HOXC11-202ENST00000546378 RNF168Q8IYW5 571 aaPredicted RBP14.78□□□□□ -0.04
HOXC11-202ENST00000546378 QKIQ96PU8 341 aaKnown RBP eCLIP14.78□□□□□ -0.04
HOXC11-202ENST00000546378 OAZ3Q9UMX2 235 aa14.78□□□□□ -0.04
HOXC11-202ENST00000546378 PHF24Q9UPV7 400 aa14.78□□□□□ -0.04
HOXC11-202ENST00000546378 EFR3BQ9Y2G0 817 aa14.78□□□□□ -0.04
HOXC11-202ENST00000546378 KCTD3Q9Y597 815 aa14.78□□□□□ -0.04
HOXC11-202ENST00000546378 KIAA1217Q5T5P2 1943 aa14.78□□□□□ -0.04
HOXC11-202ENST00000546378 CLOCKO15516 846 aa14.77□□□□□ -0.04
HOXC11-202ENST00000546378 GRID2O43424 1007 aa14.77□□□□□ -0.04
HOXC11-202ENST00000546378 HBP1O60381 514 aa14.77□□□□□ -0.04
HOXC11-202ENST00000546378 NOL3O60936 208 aaKnown RBP14.77□□□□□ -0.04
HOXC11-202ENST00000546378 GCATO75600 419 aa14.77□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms