RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 SARDHQ9UL12 918 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 ZNF195O14628 629 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 TREHO43280 583 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 ZNF623O75123 536 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 JRKO75564 520 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 CLPXO76031 633 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 GCNT3O95395 438 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 C1RP00736 705 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 PROCP04070 461 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 DNAJB1P25685 340 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 GABRB3P28472 473 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 BMXP51813 675 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 NDST2P52849 883 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 SOX10P56693 466 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 SLC25A3Q00325 362 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 CDKL1Q00532 357 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 MBTD1Q05BQ5 628 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 PPIGQ13427 754 aaKnown RBP eCLIP5.32□□□□□ -1.56
USP28-213ENST00000544967 SQSTM1Q13501 440 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 C21orf62-AS1Q17RA5 79 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 MGAT5BQ3V5L5 792 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 SMUG1Q53HV7 270 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 WDR44Q5JSH3 913 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 PDPK2PQ6A1A2 396 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 RINT1Q6NUQ1 792 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 PSRC1Q6PGN9 363 aaPredicted RBP5.32□□□□□ -1.56
USP28-213ENST00000544967 MON1BQ7L1V2 547 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 OTOP3Q7RTS5 596 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 HEATR4Q86WZ0 1026 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 DEFB107AQ8IZN7 70 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 POU5F2Q8N7G0 328 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 LEMD2Q8NC56 503 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 SUN5Q8TC36 379 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 PDCD6IPQ8WUM4 868 aaKnown RBP5.32□□□□□ -1.56
USP28-213ENST00000544967 TFB1MQ8WVM0 346 aaKnown RBP5.32□□□□□ -1.56
USP28-213ENST00000544967 LINC01599Q8WXQ3 324 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 TFAP2CQ92754 450 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 GJA10Q969M2 543 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 FEM1CQ96JP0 617 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 SERAC1Q96JX3 654 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 BTN2A3PQ96KV6 586 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 SLITRK1Q96PX8 696 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 NPLQ9BXD5 320 aaPredicted RBP5.32□□□□□ -1.56
USP28-213ENST00000544967 ASPSCR1Q9BZE9 553 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 RGS18Q9NS28 235 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 TRMT13Q9NUP7 481 aaKnown RBP5.32□□□□□ -1.56
USP28-213ENST00000544967 RAB20Q9NX57 234 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 TEX264Q9Y6I9 313 aa5.32□□□□□ -1.56
USP28-213ENST00000544967 FADS2P1A8MWK0 482 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 ACOT8O14734 319 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 XPO1O14980 1071 aaKnown RBP5.31□□□□□ -1.56
USP28-213ENST00000544967 SPTLC1O15269 473 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 XPOTO43592 962 aaKnown RBP5.31□□□□□ -1.56
USP28-213ENST00000544967 NUAK1O60285 661 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 GLRA3O75311 464 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 FKBP9O95302 570 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 DARSP14868 501 aaKnown RBP5.31□□□□□ -1.56
USP28-213ENST00000544967 TGM1P22735 817 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 ME2P23368 584 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 GLDCP23378 1020 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 VAMP7P51809 220 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 ALDH18A1P54886 795 aaKnown RBP5.31□□□□□ -1.56
USP28-213ENST00000544967 CTAG1AP78358 180 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 SMAD3P84022 425 aaKnown RBP5.31□□□□□ -1.56
USP28-213ENST00000544967 FLOT2Q14254 428 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 CBX2Q14781 532 aaPredicted RBP5.31□□□□□ -1.56
USP28-213ENST00000544967 FASTKD3Q14CZ7 662 aaKnown RBP5.31□□□□□ -1.56
USP28-213ENST00000544967 CHI3L2Q15782 390 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 ANKDD1AQ495B1 522 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 NHSL2Q5HYW2 709 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 ATAD3BQ5T9A4 648 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 MBLAC2Q68D91 279 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 FKBP9P1Q75LS8 142 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 TFAP2DQ7Z6R9 452 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 USP37Q86T82 979 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 CLVS1Q8IUQ0 354 aaPredicted RBP5.31□□□□□ -1.56
USP28-213ENST00000544967 PALM2Q8IXS6 379 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 KYQ8NBH2 561 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 PIK3C3Q8NEB9 887 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 BRSK1Q8TDC3 778 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 CPT1BQ92523 772 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 HSPH1Q92598 858 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 MARVELD3Q96A59 401 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 ACDQ96AP0 544 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 ASB9Q96DX5 294 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 RILPQ96NA2 401 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 FTHL17Q9BXU8 183 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 CDH19Q9H159 772 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 TRPV6Q9H1D0 765 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 ZNF385DQ9H6B1 395 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 CAAP1Q9H8G2 361 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 DNAJC17Q9NVM6 304 aaKnown RBP5.31□□□□□ -1.56
USP28-213ENST00000544967 UGT2A1Q9Y4X1 527 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 CDY2AQ9Y6F7 541 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 CDY1Q9Y6F8 540 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 VWA8A3KMH1 1905 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 TET1Q8NFU7 2136 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 ABHD14A-ACY1A0A1B0GW23 586 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 RGSL1A5PLK6 1076 aa5.31□□□□□ -1.56
USP28-213ENST00000544967 EVPLLA8MZ36 301 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms