RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	RAI2	Q9Y5P3	530 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	WASF2	Q9Y6W5	498 aa		10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	KIF26A	Q9ULI4	1882 aa	Predicted RBP	10.27	□□□□□ -0.77
CPSF7-221	ENST00000543545	PRR33	A8MZF0	331 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	RNASEH2A	O75792	299 aa	Known RBP	10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	METTL18	O95568	372 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	MT-CYB	P00156	380 aa	Predicted RBP	10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	GABRG2	P18507	467 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	C5AR1	P21730	350 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	FDFT1	P37268	417 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	ADCY8	P40145	1251 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	COPA	P53621	1224 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	EPHB1	P54762	984 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	BASP1	P80723	227 aa	Known RBP	10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	MRPS25	P82663	173 aa	Known RBP	10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	SKOR1	P84550	965 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	ZBTB16	Q05516	673 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	CCDC15	Q0P6D6	951 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	GPS1	Q13098	491 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	TTC31	Q49AM3	519 aa	Predicted RBP	10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	ZNF805	Q5CZA5	627 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	ARMC12	Q5T9G4	340 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	FBXL19	Q6PCT2	694 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	TSSK4	Q6SA08	328 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	C4orf22	Q6V702	233 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	MAMSTR	Q6ZN01	415 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	MAATS1	Q7Z4T9	603 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	TTC7B	Q86TV6	843 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	PRPF39	Q86UA1	669 aa	Known RBP	10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	FAM124A	Q86V42	546 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	HDDC3	Q8N4P3	179 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	GLIS1	Q8NBF1	620 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	IPMK	Q8NFU5	416 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	CCHCR1	Q8TD31	782 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	IMP4	Q96G21	291 aa	Known RBP	10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	ZNF641	Q96N77	438 aa	Predicted RBP	10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	FSD1L	Q9BXM9	530 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	TPSD1	Q9BZJ3	242 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	PABPC3	Q9H361	631 aa	Known RBP	10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	ETNK1	Q9HBU6	452 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	PCDH9	Q9HC56	1237 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	FBXL12	Q9NXK8	326 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	PCYOX1	Q9UHG3	505 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	CHKB	Q9Y259	395 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	AAR2	Q9Y312	384 aa	Known RBP	10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	PCDHB9	Q9Y5E1	797 aa		10.26	□□□□□ -0.77
CPSF7-221	ENST00000543545	TECTA	O75443	2155 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545		A0A1W2PP55	124 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545		A0A1W2PQ67	120 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	C16orf96	A6NNT2	1141 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	PLK4	O00444	970 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	DLL1	O00548	723 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	AXIN1	O15169	862 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	TTI1	O43156	1089 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	PSMD3	O43242	534 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	GPR37L1	O60883	481 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	SOCS5	O75159	536 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	CP	P00450	1065 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	MMP2	P08253	660 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	PTGIR	P43119	386 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	METAP1	P53582	386 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	WNT3A	P56704	352 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	POLR2L	P62875	67 aa	Known RBP	10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	CDK18	Q07002	472 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	TRAF2	Q12933	501 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	MPP3	Q13368	585 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	DHX34	Q14147	1143 aa	Known RBP	10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	SPARCL1	Q14515	664 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	SYCP2L	Q5T4T6	812 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	ALG1L	Q6GMV1	187 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	SYDE1	Q6ZW31	735 aa	Predicted RBP	10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	ERN2	Q76MJ5	926 aa	Known RBP	10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	ZNF572	Q7Z3I7	529 aa	Predicted RBP	10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	JAML	Q86YT9	394 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	NDUFAF2	Q8N183	169 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	LPCAT1	Q8NF37	534 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	MDGA1	Q8NFP4	955 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	ARRDC3	Q96B67	414 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	RMDN1	Q96DB5	314 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	OXNAD1	Q96HP4	312 aa	Predicted RBP	10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	FICD	Q9BVA6	458 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	ADGRE3	Q9BY15	652 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	TRIM31	Q9BZY9	425 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	CD248	Q9HCU0	757 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	C11orf16	Q9NQ32	467 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	VPS45	Q9NRW7	570 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	SCML1	Q9UN30	329 aa		10.25	□□□□□ -0.77
CPSF7-221	ENST00000543545	FAM187A	A6NFU0	413 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	FAM47DP	A6NHR8	397 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545		K7ESF4	209 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	NEMP1	O14524	444 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	MAP3K13	O43283	966 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	RAD51C	O43502	376 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	ZNF217	O75362	1048 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	PGLS	O95336	258 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	PRKCG	P05129	697 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	APRT	P07741	180 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	TIMP2	P16035	220 aa		10.24	□□□□□ -0.77
CPSF7-221	ENST00000543545	NFKBIA	P25963	317 aa		10.24	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 18 ms