RNA–Protein interactions for RNA: ENST00000540475.5

SEMA4D-223, Transcript of semaphorin 4D, human

TSL 3

Gene SEMA4D, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEMA4D-223	ENST00000540475	FPGT	O14772	594 aa		13.27	□□□□□ -0.29
SEMA4D-223	ENST00000540475	PRAMEF11	O60813	436 aa		13.27	□□□□□ -0.29
SEMA4D-223	ENST00000540475	JUP	P14923	745 aa		13.27	□□□□□ -0.29
SEMA4D-223	ENST00000540475	DES	P17661	470 aa		13.27	□□□□□ -0.29
SEMA4D-223	ENST00000540475	PSMA2	P25787	234 aa		13.27	□□□□□ -0.29
SEMA4D-223	ENST00000540475	HNF1B	P35680	557 aa		13.27	□□□□□ -0.29
SEMA4D-223	ENST00000540475	PBX1	P40424	430 aa		13.27	□□□□□ -0.29
SEMA4D-223	ENST00000540475	TPI1	P60174	286 aa		13.27	□□□□□ -0.29
SEMA4D-223	ENST00000540475	YPEL5	P62699	121 aa		13.27	□□□□□ -0.29
SEMA4D-223	ENST00000540475	INSM1	Q01101	510 aa	Predicted RBP	13.27	□□□□□ -0.29
SEMA4D-223	ENST00000540475	CYP4F3	Q08477	520 aa		13.27	□□□□□ -0.29
SEMA4D-223	ENST00000540475	SGCG	Q13326	291 aa		13.27	□□□□□ -0.29
SEMA4D-223	ENST00000540475	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.27	□□□□□ -0.29
SEMA4D-223	ENST00000540475	ACAP1	Q15027	740 aa		13.27	□□□□□ -0.29
SEMA4D-223	ENST00000540475	AGER	Q15109	404 aa		13.27	□□□□□ -0.29
SEMA4D-223	ENST00000540475	CA9	Q16790	459 aa		13.27	□□□□□ -0.29
SEMA4D-223	ENST00000540475	TMEM52B	Q4KMG9	183 aa		13.27	□□□□□ -0.29
SEMA4D-223	ENST00000540475	TTC7B	Q86TV6	843 aa		13.27	□□□□□ -0.29
SEMA4D-223	ENST00000540475	DNAAF5	Q86Y56	855 aa		13.27	□□□□□ -0.29
SEMA4D-223	ENST00000540475	RYBP	Q8N488	228 aa	Predicted RBP	13.27	□□□□□ -0.29
SEMA4D-223	ENST00000540475	DCBLD1	Q8N8Z6	715 aa		13.27	□□□□□ -0.29
SEMA4D-223	ENST00000540475	TBATA	Q96M53	351 aa		13.27	□□□□□ -0.29
SEMA4D-223	ENST00000540475	ZNF641	Q96N77	438 aa	Predicted RBP	13.27	□□□□□ -0.29
SEMA4D-223	ENST00000540475	PEBP4	Q96S96	227 aa		13.27	□□□□□ -0.29
SEMA4D-223	ENST00000540475	DUSP23	Q9BVJ7	150 aa		13.27	□□□□□ -0.29
SEMA4D-223	ENST00000540475	SLC39A8	Q9C0K1	460 aa		13.27	□□□□□ -0.29
SEMA4D-223	ENST00000540475	USP29	Q9HBJ7	922 aa		13.27	□□□□□ -0.29
SEMA4D-223	ENST00000540475	KLF15	Q9UIH9	416 aa		13.27	□□□□□ -0.29
SEMA4D-223	ENST00000540475	AP4E1	Q9UPM8	1137 aa		13.27	□□□□□ -0.29
SEMA4D-223	ENST00000540475	ITM2B	Q9Y287	266 aa		13.27	□□□□□ -0.29
SEMA4D-223	ENST00000540475	LY6G6E	A0A0G2JKS1	128 aa		13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475		A0A1W2PQJ5	194 aa		13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475	NEMP2	A6NFY4	417 aa		13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475		J3KR12	359 aa		13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475	TPP1	O14773	563 aa		13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475	INSIG1	O15503	277 aa		13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475	LZTS3	O60299	673 aa	Predicted RBP	13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475	LRCH4	O75427	683 aa		13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475	GP1BA	P07359	652 aa		13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475	MYBL1	P10243	752 aa		13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475	MIP	P30301	263 aa		13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475	PCK1	P35558	622 aa		13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475	RHOA	P61586	193 aa		13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475	NSUN2	Q08J23	767 aa	Known RBP eCLIP	13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475	TARDBP	Q13148	414 aa	Known RBP eCLIP	13.26	□□□□□ -0.29	2e-6	■■■□□ 18.6
SEMA4D-223	ENST00000540475	TPRG1L	Q5T0D9	272 aa		13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475	HES3	Q5TGS1	186 aa		13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475	CDCP2	Q5VXM1	449 aa		13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475	HGSNAT	Q68CP4	663 aa		13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475	CAVIN1	Q6NZI2	390 aa	Known RBP	13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475	PTAR1	Q7Z6K3	402 aa	Predicted RBP	13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475	PARG	Q86W56	976 aa		13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475	ARHGAP12	Q8IWW6	846 aa		13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475	TP53I13	Q8NBR0	393 aa	Predicted RBP	13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475	SYN2	Q92777	582 aa	Predicted RBP	13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475	SNRNP25	Q9BV90	132 aa	Known RBP	13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475	TRIM7	Q9C029	511 aa		13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475	SUV39H2	Q9H5I1	410 aa		13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475	CAAP1	Q9H8G2	361 aa		13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475	UBA2	Q9UBT2	640 aa	Predicted RBP	13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475	CNOT8	Q9UFF9	292 aa	Known RBP	13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475	RALY	Q9UKM9	306 aa	Known RBP	13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475		U3KQA8	63 aa		13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475	IGSF10	Q6WRI0	2623 aa		13.26	□□□□□ -0.29
SEMA4D-223	ENST00000540475	CFAP69	A5D8W1	941 aa		13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	TMCO5B	A8MYB1	307 aa		13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475		K7ESM1	405 aa		13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	EEF2K	O00418	725 aa	Known RBP	13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	ATMIN	O43313	823 aa	Predicted RBP	13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	BUB1B	O60566	1050 aa	Predicted RBP	13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	TM7SF2	O76062	418 aa		13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	RNF8	O76064	485 aa		13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	ALPPL2	P10696	532 aa		13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	ERCC2	P18074	760 aa		13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	ITIH2	P19823	946 aa		13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	IGFALS	P35858	605 aa		13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	PAPOLA	P51003	745 aa	Known RBP	13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	KLHL30	Q0D2K2	578 aa		13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	EIF2B5	Q13144	721 aa	Known RBP	13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	DPYS	Q14117	519 aa		13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	RFTN1	Q14699	578 aa	Predicted RBP	13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	UGP2	Q16851	508 aa		13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	CCDC157	Q569K6	752 aa		13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	RFX8	Q6ZV50	586 aa		13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	ZNF548	Q8NEK5	533 aa	Predicted RBP	13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	BTN2A2	Q8WVV5	523 aa		13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	SPOCK2	Q92563	424 aa		13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	ECHDC3	Q96DC8	303 aa		13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	TRIM11	Q96F44	468 aa		13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	APOLD1	Q96LR9	279 aa		13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	TUBGCP5	Q96RT8	1024 aa		13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	KCTD15	Q96SI1	283 aa	Predicted RBP	13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	DHX35	Q9H5Z1	703 aa	Known RBP	13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	MRPL47	Q9HD33	250 aa	Known RBP	13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	GPATCH2L	Q9NWQ4	482 aa		13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	DNAJC28	Q9NX36	388 aa		13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	SALL4	Q9UJQ4	1053 aa		13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	LHX6	Q9UPM6	363 aa		13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	CLCA2	Q9UQC9	943 aa		13.25	□□□□□ -0.29
SEMA4D-223	ENST00000540475	RAX	Q9Y2V3	346 aa		13.25	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms