RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 MXD1Q05195 221 aa8.82□□□□□ -1
YBX3-208ENST00000540447 PCDH1Q08174 1060 aa8.82□□□□□ -1
YBX3-208ENST00000540447 NFE2L1Q14494 772 aa8.82□□□□□ -1
YBX3-208ENST00000540447 TLR1Q15399 786 aa8.82□□□□□ -1
YBX3-208ENST00000540447 ALX1Q15699 326 aa8.82□□□□□ -1
YBX3-208ENST00000540447 MFSD14BQ5SR56 506 aa8.82□□□□□ -1
YBX3-208ENST00000540447 UBE2UQ5VVX9 321 aa8.82□□□□□ -1
YBX3-208ENST00000540447 AADACL2Q6P093 401 aa8.82□□□□□ -1
YBX3-208ENST00000540447 DCSTAMPQ9H295 470 aa8.82□□□□□ -1
YBX3-208ENST00000540447 CPVLQ9H3G5 476 aa8.82□□□□□ -1
YBX3-208ENST00000540447 TBC1D30Q9Y2I9 924 aa8.82□□□□□ -1
YBX3-208ENST00000540447 LOC102724428A0A0B4J2F2 783 aa8.82□□□□□ -1
YBX3-208ENST00000540447 CD36P16671 472 aa8.82□□□□□ -1
YBX3-208ENST00000540447 PGAM1P18669 254 aa8.82□□□□□ -1
YBX3-208ENST00000540447 UQCRC1P31930 480 aa8.82□□□□□ -1
YBX3-208ENST00000540447 DSG3P32926 999 aa8.82□□□□□ -1
YBX3-208ENST00000540447 CDH13P55290 713 aa8.82□□□□□ -1
YBX3-208ENST00000540447 SIK1P57059 783 aa8.82□□□□□ -1
YBX3-208ENST00000540447 RBM48Q5RL73 367 aaKnown RBP8.82□□□□□ -1
YBX3-208ENST00000540447 PDXDC2PQ6P474 469 aa8.82□□□□□ -1
YBX3-208ENST00000540447 PTCHD4Q6ZW05 846 aa8.82□□□□□ -1
YBX3-208ENST00000540447 SLC20A1Q8WUM9 679 aa8.82□□□□□ -1
YBX3-208ENST00000540447 ASB2Q96Q27 587 aa8.82□□□□□ -1
YBX3-208ENST00000540447 TUBA1CQ9BQE3 449 aa8.82□□□□□ -1
YBX3-208ENST00000540447 FICDQ9BVA6 458 aa8.82□□□□□ -1
YBX3-208ENST00000540447 SLC7A8Q9UHI5 535 aa8.82□□□□□ -1
YBX3-208ENST00000540447 PLXNC1O60486 1568 aa8.82□□□□□ -1
YBX3-208ENST00000540447 LRRC10BA6NIK2 292 aa8.82□□□□□ -1
YBX3-208ENST00000540447 USP17L15C9J2P7 530 aa8.82□□□□□ -1
YBX3-208ENST00000540447 USP17L13C9JLJ4 530 aa8.82□□□□□ -1
YBX3-208ENST00000540447 USP17L11C9JVI0 530 aa8.82□□□□□ -1
YBX3-208ENST00000540447 USP17L18D6R9N7 530 aa8.82□□□□□ -1
YBX3-208ENST00000540447 USP17L22D6RA61 530 aa8.82□□□□□ -1
YBX3-208ENST00000540447 USP17L17D6RBQ6 530 aa8.82□□□□□ -1
YBX3-208ENST00000540447 USP17L19D6RCP7 530 aa8.82□□□□□ -1
YBX3-208ENST00000540447 USP17L20D6RJB6 530 aa8.82□□□□□ -1
YBX3-208ENST00000540447 CYP11B1P15538 503 aa8.82□□□□□ -1
YBX3-208ENST00000540447 GABRB2P47870 512 aa8.82□□□□□ -1
YBX3-208ENST00000540447 USP17L24Q0WX57 530 aa8.82□□□□□ -1
YBX3-208ENST00000540447 MYLK3Q32MK0 819 aa8.82□□□□□ -1
YBX3-208ENST00000540447 HES5Q5TA89 166 aa8.82□□□□□ -1
YBX3-208ENST00000540447 UGT3A1Q6NUS8 523 aa8.82□□□□□ -1
YBX3-208ENST00000540447 ADGRD2Q7Z7M1 963 aa8.82□□□□□ -1
YBX3-208ENST00000540447 FOXP4Q8IVH2 680 aaPredicted RBP8.82□□□□□ -1
YBX3-208ENST00000540447 CMTR2Q8IYT2 770 aaKnown RBP8.82□□□□□ -1
YBX3-208ENST00000540447 PIH1D2Q8WWB5 315 aa8.82□□□□□ -1
YBX3-208ENST00000540447 GAD1Q99259 594 aa8.82□□□□□ -1
YBX3-208ENST00000540447 HOPXQ9BPY8 73 aaPredicted RBP8.82□□□□□ -1
YBX3-208ENST00000540447 ANKRA2Q9H9E1 313 aa8.82□□□□□ -1
YBX3-208ENST00000540447 TAS2R3Q9NYW6 316 aa8.82□□□□□ -1
YBX3-208ENST00000540447 ACTR3BQ9P1U1 418 aa8.82□□□□□ -1
YBX3-208ENST00000540447 USP42Q9H9J4 1324 aaKnown RBP8.82□□□□□ -1
YBX3-208ENST00000540447 ATP6AP2A0A1C7CYW4 349 aa8.82□□□□□ -1
YBX3-208ENST00000540447 ICMTO60725 284 aa8.82□□□□□ -1
YBX3-208ENST00000540447 ANXA9O76027 345 aa8.82□□□□□ -1
YBX3-208ENST00000540447 SLC2A2P11168 524 aaPredicted RBP8.82□□□□□ -1
YBX3-208ENST00000540447 TSHRP16473 764 aa8.82□□□□□ -1
YBX3-208ENST00000540447 IGFBP5P24593 272 aa8.82□□□□□ -1
YBX3-208ENST00000540447 MAGEA6P43360 314 aa8.82□□□□□ -1
YBX3-208ENST00000540447 RGS6P49758 472 aa8.82□□□□□ -1
YBX3-208ENST00000540447 SIM2Q14190 667 aaPredicted RBP8.82□□□□□ -1
YBX3-208ENST00000540447 ZNF425Q6IV72 752 aa8.82□□□□□ -1
YBX3-208ENST00000540447 ATAD1Q8NBU5 361 aa8.82□□□□□ -1
YBX3-208ENST00000540447 FCGR1BQ92637 280 aa8.82□□□□□ -1
YBX3-208ENST00000540447 C12orf66Q96MD2 445 aa8.82□□□□□ -1
YBX3-208ENST00000540447 IL25Q9H293 177 aa8.82□□□□□ -1
YBX3-208ENST00000540447 MAGEL2Q9UJ55 1249 aa8.82□□□□□ -1
YBX3-208ENST00000540447 PCDHGC3Q9UN70 934 aa8.82□□□□□ -1
YBX3-208ENST00000540447 ARHGDIBP52566 201 aa8.81□□□□□ -1
YBX3-208ENST00000540447 NFIAQ12857 509 aa8.81□□□□□ -1
YBX3-208ENST00000540447 CMPK2Q5EBM0 449 aa8.81□□□□□ -1
YBX3-208ENST00000540447 SPANXN3Q5MJ09 141 aa8.81□□□□□ -1
YBX3-208ENST00000540447 MRNIPQ6NTE8 343 aa8.81□□□□□ -1
YBX3-208ENST00000540447 ARSKQ6UWY0 536 aa8.81□□□□□ -1
YBX3-208ENST00000540447 LXNQ9BS40 222 aa8.81□□□□□ -1
YBX3-208ENST00000540447 TMEM109Q9BVC6 243 aa8.81□□□□□ -1
YBX3-208ENST00000540447 IDI2Q9BXS1 227 aa8.81□□□□□ -1
YBX3-208ENST00000540447 PPA2Q9H2U2 334 aa8.81□□□□□ -1
YBX3-208ENST00000540447 PPIEQ9UNP9 301 aaKnown RBP8.81□□□□□ -1
YBX3-208ENST00000540447 PLA2R1Q13018 1463 aa8.81□□□□□ -1
YBX3-208ENST00000540447 OVOS2A0A0G2JMS6 1433 aa8.81□□□□□ -1
YBX3-208ENST00000540447 STX16-NPEPL1H3BU86 382 aa8.81□□□□□ -1
YBX3-208ENST00000540447 STX16O14662 325 aa8.81□□□□□ -1
YBX3-208ENST00000540447 KMOO15229 486 aa8.81□□□□□ -1
YBX3-208ENST00000540447 NMT2O60551 498 aa8.81□□□□□ -1
YBX3-208ENST00000540447 SNAPC5O75971 98 aa8.81□□□□□ -1
YBX3-208ENST00000540447 CCNDBP1O95273 360 aa8.81□□□□□ -1
YBX3-208ENST00000540447 MOCS2O96007 188 aaPredicted RBP8.81□□□□□ -1
YBX3-208ENST00000540447 NFKB1P19838 968 aa8.81□□□□□ -1
YBX3-208ENST00000540447 ETV1P50549 477 aa8.81□□□□□ -1
YBX3-208ENST00000540447 NAGLUP54802 743 aa8.81□□□□□ -1
YBX3-208ENST00000540447 ZNF181Q2M3W8 571 aa8.81□□□□□ -1
YBX3-208ENST00000540447 ARMC6Q6NXE6 501 aa8.81□□□□□ -1
YBX3-208ENST00000540447 WDR59Q6PJI9 974 aa8.81□□□□□ -1
YBX3-208ENST00000540447 ASB15Q8WXK1 588 aa8.81□□□□□ -1
YBX3-208ENST00000540447 POP5Q969H6 163 aaKnown RBP8.81□□□□□ -1
YBX3-208ENST00000540447 C7orf26Q96N11 449 aa8.81□□□□□ -1
YBX3-208ENST00000540447 BIN3Q9NQY0 253 aa8.81□□□□□ -1
YBX3-208ENST00000540447 ARHGAP28Q9P2N2 729 aa8.81□□□□□ -1
YBX3-208ENST00000540447 CLEC4AQ9UMR7 237 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms