RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 LRIG2O94898 1065 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 CYP1A1P04798 512 aaPredicted RBP13.75□□□□□ -0.21
SS18-204ENST00000539244 ANXA6P08133 673 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 MMEP08473 750 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 ITGA2BP08514 1039 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 TSHRP16473 764 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 MMP8P22894 467 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 PTPN9P43378 593 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 PEX5P50542 639 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 ADKP55263 362 aaKnown RBP13.75□□□□□ -0.21
SS18-204ENST00000539244 C1orf61Q13536 156 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 C15orf59Q2T9L4 293 aaPredicted RBP13.75□□□□□ -0.21
SS18-204ENST00000539244 CCDC14Q49A88 953 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 FAM72AQ5TYM5 149 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 NAA35Q5VZE5 725 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 FAM72DQ6L9T8 149 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 LVRNQ6Q4G3 990 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 GDPD4Q6W3E5 623 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 VPS36Q86VN1 386 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 FAM72BQ86X60 149 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 FSTL5Q8N475 847 aaPredicted RBP13.75□□□□□ -0.21
SS18-204ENST00000539244 TP53I13Q8NBR0 393 aaPredicted RBP13.75□□□□□ -0.21
SS18-204ENST00000539244 RXFP2Q8WXD0 754 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 CASKIN2Q8WXE0 1202 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 CENPIQ92674 756 aaPredicted RBP13.75□□□□□ -0.21
SS18-204ENST00000539244 COL26A1Q96A83 441 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 LIN37Q96GY3 246 aaPredicted RBP13.75□□□□□ -0.21
SS18-204ENST00000539244 GDAP1L1Q96MZ0 367 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 CCDC3Q9BQI4 270 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 C1QTNF7Q9BXJ2 289 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 SLC13A1Q9BZW2 595 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 TTYH3Q9C0H2 523 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 DKK3Q9UBP4 350 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 DNAI1Q9UI46 699 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 NOCTQ9UK39 431 aaKnown RBP13.75□□□□□ -0.21
SS18-204ENST00000539244 PADI4Q9UM07 663 aa13.75□□□□□ -0.21
SS18-204ENST00000539244 LRP4O75096 1905 aa13.74□□□□□ -0.21
SS18-204ENST00000539244 TENM4Q6N022 2769 aa13.74□□□□□ -0.21
SS18-204ENST00000539244 PMS2P1A4D2B8 440 aa13.74□□□□□ -0.21
SS18-204ENST00000539244 C2CD4BA6NLJ0 364 aa13.74□□□□□ -0.21
SS18-204ENST00000539244 B8ZZF3 427 aa13.74□□□□□ -0.21
SS18-204ENST00000539244 CASC3O15234 703 aaKnown RBP13.74□□□□□ -0.21
SS18-204ENST00000539244 YY2O15391 372 aa13.74□□□□□ -0.21
SS18-204ENST00000539244 SDC4P31431 198 aa13.74□□□□□ -0.21
SS18-204ENST00000539244 EIF4A3P38919 411 aaKnown RBP13.74□□□□□ -0.21
SS18-204ENST00000539244 BLKP51451 505 aa13.74□□□□□ -0.21
SS18-204ENST00000539244 GSCP56915 257 aaPredicted RBP13.74□□□□□ -0.21
SS18-204ENST00000539244 UBE2HP62256 183 aa13.74□□□□□ -0.21
SS18-204ENST00000539244 PPARDQ03181 441 aa13.74□□□□□ -0.21
SS18-204ENST00000539244 CLN3Q13286 438 aa13.74□□□□□ -0.21
SS18-204ENST00000539244 EIF3IQ13347 325 aaKnown RBP13.74□□□□□ -0.21
SS18-204ENST00000539244 SPIDRQ14159 915 aa13.74□□□□□ -0.21
SS18-204ENST00000539244 LY6DQ14210 128 aa13.74□□□□□ -0.21
SS18-204ENST00000539244 CDO1Q16878 200 aa13.74□□□□□ -0.21
SS18-204ENST00000539244 INO80DQ53TQ3 878 aaPredicted RBP13.74□□□□□ -0.21
SS18-204ENST00000539244 ATXN7L2Q5T6C5 722 aaPredicted RBP13.74□□□□□ -0.21
SS18-204ENST00000539244 FAXCQ5TGI0 409 aa13.74□□□□□ -0.21
SS18-204ENST00000539244 RWDD4Q6NW29 188 aaKnown RBP13.74□□□□□ -0.21
SS18-204ENST00000539244 ESRP1Q6NXG1 681 aaKnown RBP13.74□□□□□ -0.21
SS18-204ENST00000539244 CRTC1Q6UUV9 634 aa13.74□□□□□ -0.21
SS18-204ENST00000539244 TTC7BQ86TV6 843 aa13.74□□□□□ -0.21
SS18-204ENST00000539244 SDR16C5Q8N3Y7 309 aa13.74□□□□□ -0.21
SS18-204ENST00000539244 ARL10Q8N8L6 244 aa13.74□□□□□ -0.21
SS18-204ENST00000539244 NTAN1Q96AB6 310 aa13.74□□□□□ -0.21
SS18-204ENST00000539244 TBC1D31Q96DN5 1066 aa13.74□□□□□ -0.21
SS18-204ENST00000539244 MED8Q96G25 268 aa13.74□□□□□ -0.21
SS18-204ENST00000539244 EPAS1Q99814 870 aa13.74□□□□□ -0.21
SS18-204ENST00000539244 MBNL1Q9NR56 388 aaKnown RBP13.74□□□□□ -0.21
SS18-204ENST00000539244 LRRK1Q38SD2 2015 aa13.74□□□□□ -0.21
SS18-204ENST00000539244 AHCTF1Q8WYP5 2266 aa13.74□□□□□ -0.21
SS18-204ENST00000539244 FAM170AA1A519 330 aa13.73□□□□□ -0.21
SS18-204ENST00000539244 TMEM110-MUSTN1A8MSY1 372 aa13.73□□□□□ -0.21
SS18-204ENST00000539244 MMP20O60882 483 aa13.73□□□□□ -0.21
SS18-204ENST00000539244 TMCC1O94876 653 aa13.73□□□□□ -0.21
SS18-204ENST00000539244 TNFSF15O95150 251 aa13.73□□□□□ -0.21
SS18-204ENST00000539244 PLEKP08567 350 aaPredicted RBP13.73□□□□□ -0.21
SS18-204ENST00000539244 ERCC5P28715 1186 aaPredicted RBP13.73□□□□□ -0.21
SS18-204ENST00000539244 SUOXP51687 545 aa13.73□□□□□ -0.21
SS18-204ENST00000539244 HK3P52790 923 aa13.73□□□□□ -0.21
SS18-204ENST00000539244 HDAC4P56524 1084 aa13.73□□□□□ -0.21
SS18-204ENST00000539244 FMO1Q01740 532 aa13.73□□□□□ -0.21
SS18-204ENST00000539244 CDR2Q01850 454 aa13.73□□□□□ -0.21
SS18-204ENST00000539244 RAD51Q06609 339 aa13.73□□□□□ -0.21
SS18-204ENST00000539244 ELOCQ15369 112 aa13.73□□□□□ -0.21
SS18-204ENST00000539244 KLHL40Q2TBA0 621 aa13.73□□□□□ -0.21
SS18-204ENST00000539244 TMEM52BQ4KMG9 183 aa13.73□□□□□ -0.21
SS18-204ENST00000539244 CCDC185Q8N715 623 aa13.73□□□□□ -0.21
SS18-204ENST00000539244 JOSD2Q8TAC2 188 aa13.73□□□□□ -0.21
SS18-204ENST00000539244 GPT2Q8TD30 523 aa13.73□□□□□ -0.21
SS18-204ENST00000539244 HCAR2Q8TDS4 363 aa13.73□□□□□ -0.21
SS18-204ENST00000539244 CXorf40AQ8TE69 158 aa13.73□□□□□ -0.21
SS18-204ENST00000539244 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.73□□□□□ -0.21
SS18-204ENST00000539244 MAGEB5Q9BZ81 275 aa13.73□□□□□ -0.21
SS18-204ENST00000539244 CPEB1Q9BZB8 566 aaKnown RBP13.73□□□□□ -0.21
SS18-204ENST00000539244 NOL6Q9H6R4 1146 aaKnown RBP13.73□□□□□ -0.21
SS18-204ENST00000539244 ACSL6Q9UKU0 697 aa13.73□□□□□ -0.21
SS18-204ENST00000539244 PCDHGA7Q9Y5G6 932 aa13.73□□□□□ -0.21
SS18-204ENST00000539244 SCN8AQ9UQD0 1980 aa13.72□□□□□ -0.21
SS18-204ENST00000539244 TSPAN11A1L157 253 aa13.72□□□□□ -0.21
SS18-204ENST00000539244 TMX2-CTNND1H3BSU7 103 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms