RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 RUSC1Q9BVN2 902 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 INO80BQ9C086 356 aaPredicted RBP3.76□□□□□ -1.81
MCF2-210ENST00000536274 JMJD4Q9H9V9 463 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 MOCS1Q9NZB8 636 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 FAM8A1Q9UBU6 413 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.76□□□□□ -1.81
MCF2-210ENST00000536274 PCDHGC3Q9UN70 934 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 RPH3AQ9Y2J0 694 aaPredicted RBP3.76□□□□□ -1.81
MCF2-210ENST00000536274 A0A087WXM4 84 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 FAM172BPA6NC97 362 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 USP17L3A6NCW0 530 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 USP17L4A6NCW7 530 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 USP17L15C9J2P7 530 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 USP17L10C9JJH3 530 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 USP17L13C9JLJ4 530 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 USP17L12C9JPN9 530 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 USP17L11C9JVI0 530 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 USP17L21D6R901 530 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 USP17L18D6R9N7 530 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 USP17L22D6RA61 530 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 USP17L17D6RBQ6 530 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 USP17L19D6RCP7 530 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 USP17L20D6RJB6 530 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 F5H423 210 aaPredicted RBP3.76□□□□□ -1.81
MCF2-210ENST00000536274 DLGAP1O14490 977 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 COPEO14579 308 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 TFECO14948 347 aaPredicted RBP3.76□□□□□ -1.81
MCF2-210ENST00000536274 SLC22A1O15245 554 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 MTSS1O43312 755 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 PSTPIP1O43586 416 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 SH3BP5O60239 455 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 BCAS1O75363 584 aaPredicted RBP3.76□□□□□ -1.81
MCF2-210ENST00000536274 KRT18P05783 430 aaKnown RBP3.76□□□□□ -1.81
MCF2-210ENST00000536274 GLAP06280 429 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 CDH5P33151 784 aaPredicted RBP3.76□□□□□ -1.81
MCF2-210ENST00000536274 RPL35P42766 123 aaKnown RBP3.76□□□□□ -1.81
MCF2-210ENST00000536274 IDH3AP50213 366 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 MMP16P51512 607 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 CYP2J2P51589 502 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 GDF10P55107 478 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 NLRP11P59045 1033 aaKnown RBP3.76□□□□□ -1.81
MCF2-210ENST00000536274 TXNL4AP83876 142 aaKnown RBP3.76□□□□□ -1.81
MCF2-210ENST00000536274 USP17L24Q0WX57 530 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 GALNT1Q10472 559 aaPredicted RBP3.76□□□□□ -1.81
MCF2-210ENST00000536274 AOC3Q16853 763 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 GEN1Q17RS7 908 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 CEP55Q53EZ4 464 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 TEX44Q53QW1 395 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 COLEC12Q5KU26 742 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 MROH9Q5TGP6 573 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 WDR78Q5VTH9 848 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 TTBK2Q6IQ55 1244 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 METTL2BQ6P1Q9 378 aaKnown RBP3.76□□□□□ -1.81
MCF2-210ENST00000536274 USP17L2Q6R6M4 530 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 ZBTB49Q6ZSB9 765 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 PLEKHM3Q6ZWE6 761 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 CHSY3Q70JA7 882 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 USP17L1Q7RTZ2 530 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 CAND1Q86VP6 1230 aaKnown RBP3.76□□□□□ -1.81
MCF2-210ENST00000536274 ARHGEF19Q8IW93 802 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 SYTL1Q8IYJ3 562 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 DSELQ8IZU8 1212 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 UBE2J2Q8N2K1 259 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 CBR4Q8N4T8 237 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 PPM1NQ8N819 430 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 ZBTB38Q8NAP3 1195 aaPredicted RBP3.76□□□□□ -1.81
MCF2-210ENST00000536274 ZBTB44Q8NCP5 570 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 PNMA1Q8ND90 353 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 NEDD1Q8NHV4 660 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 LRRC20Q8TCA0 184 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 GTF3C2Q8WUA4 911 aaPredicted RBP3.76□□□□□ -1.81
MCF2-210ENST00000536274 JADE3Q92613 823 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 SLCO4A1Q96BD0 722 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 HDAC11Q96DB2 347 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 CFAP36Q96G28 342 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 MSANTD3Q96H12 275 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 PGLYRP2Q96PD5 576 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 ZNF347Q96SE7 839 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 HTATIP2Q9BUP3 242 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 IMPG2Q9BZV3 1241 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 DDX24Q9GZR7 859 aaKnown RBP eCLIP3.76□□□□□ -1.81
MCF2-210ENST00000536274 TMEM117Q9H0C3 514 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 KCTD10Q9H3F6 313 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 RAD21L1Q9H4I0 556 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 ERVMER34-1Q9H9K5 563 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 DDX4Q9NQI0 724 aaKnown RBP3.76□□□□□ -1.81
MCF2-210ENST00000536274 ZNF358Q9NW07 568 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 ADA2Q9NZK5 511 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 PKD2L2Q9NZM6 624 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 CNTN3Q9P232 1028 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 VPS4AQ9UN37 437 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 APOBEC2Q9Y235 224 aaKnown RBP3.76□□□□□ -1.81
MCF2-210ENST00000536274 IRS2Q9Y4H2 1338 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 PHIPQ8WWQ0 1821 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 TRAV20A0A0B4J274 112 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 PRSS51A0A1B0GVH4 220 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 SLC12A8A0AV02 714 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 RAB19A4D1S5 217 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 TISP43B9A030 160 aa3.76□□□□□ -1.81
MCF2-210ENST00000536274 FAM86B1E9PN63 330 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms