RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 TNFAIP3P21580 790 aa13.29□□□□□ -0.28
RTN3-207ENST00000536011 GKP32189 559 aa13.29□□□□□ -0.28
RTN3-207ENST00000536011 ACTN2P35609 894 aa13.29□□□□□ -0.28
RTN3-207ENST00000536011 NDST2P52849 883 aa13.29□□□□□ -0.28
RTN3-207ENST00000536011 RPL7AP62424 266 aaKnown RBP13.29□□□□□ -0.28
RTN3-207ENST00000536011 YPEL5P62699 121 aa13.29□□□□□ -0.28
RTN3-207ENST00000536011 SEMG2Q02383 582 aa13.29□□□□□ -0.28
RTN3-207ENST00000536011 TYRO3Q06418 890 aa13.29□□□□□ -0.28
RTN3-207ENST00000536011 FZD2Q14332 565 aa13.29□□□□□ -0.28
RTN3-207ENST00000536011 NCAPHQ15003 741 aa13.29□□□□□ -0.28
RTN3-207ENST00000536011 PPP1R15BQ5SWA1 713 aa13.29□□□□□ -0.28
RTN3-207ENST00000536011 APTXQ7Z2E3 356 aaKnown RBP13.29□□□□□ -0.28
RTN3-207ENST00000536011 DNAAF5Q86Y56 855 aa13.29□□□□□ -0.28
RTN3-207ENST00000536011 PYROXD2Q8N2H3 581 aa13.29□□□□□ -0.28
RTN3-207ENST00000536011 HCAR2Q8TDS4 363 aa13.29□□□□□ -0.28
RTN3-207ENST00000536011 GLMNQ92990 594 aa13.29□□□□□ -0.28
RTN3-207ENST00000536011 HMCESQ96FZ2 354 aa13.29□□□□□ -0.28
RTN3-207ENST00000536011 APOLD1Q96LR9 279 aa13.29□□□□□ -0.28
RTN3-207ENST00000536011 TBATAQ96M53 351 aa13.29□□□□□ -0.28
RTN3-207ENST00000536011 KLF6Q99612 283 aaPredicted RBP13.29□□□□□ -0.28
RTN3-207ENST00000536011 BPIFA3Q9BQP9 254 aa13.29□□□□□ -0.28
RTN3-207ENST00000536011 CPEB1Q9BZB8 566 aaKnown RBP13.29□□□□□ -0.28
RTN3-207ENST00000536011 ABCG4Q9H172 646 aa13.29□□□□□ -0.28
RTN3-207ENST00000536011 SPASTQ9UBP0 616 aa13.29□□□□□ -0.28
RTN3-207ENST00000536011 UBA2Q9UBT2 640 aaPredicted RBP13.29□□□□□ -0.28
RTN3-207ENST00000536011 ITM2BQ9Y287 266 aa13.29□□□□□ -0.28
RTN3-207ENST00000536011 IGSF10Q6WRI0 2623 aa13.28□□□□□ -0.28
RTN3-207ENST00000536011 K7ESM1 405 aa13.28□□□□□ -0.28
RTN3-207ENST00000536011 AQP9O43315 295 aa13.28□□□□□ -0.28
RTN3-207ENST00000536011 OPA1O60313 960 aa13.28□□□□□ -0.28
RTN3-207ENST00000536011 RNF8O76064 485 aa13.28□□□□□ -0.28
RTN3-207ENST00000536011 MT-CO3P00414 261 aa13.28□□□□□ -0.28
RTN3-207ENST00000536011 JUNDP17535 347 aa13.28□□□□□ -0.28
RTN3-207ENST00000536011 PSMA2P25787 234 aa13.28□□□□□ -0.28
RTN3-207ENST00000536011 RPIAP49247 311 aa13.28□□□□□ -0.28
RTN3-207ENST00000536011 ZNF135P52742 658 aaPredicted RBP13.28□□□□□ -0.28
RTN3-207ENST00000536011 CLDN6P56747 220 aa13.28□□□□□ -0.28
RTN3-207ENST00000536011 PFN3P60673 137 aa13.28□□□□□ -0.28
RTN3-207ENST00000536011 ASIC2Q16515 512 aa13.28□□□□□ -0.28
RTN3-207ENST00000536011 ZNF542PQ5EBM4 170 aa13.28□□□□□ -0.28
RTN3-207ENST00000536011 ERAP2Q6P179 960 aa13.28□□□□□ -0.28
RTN3-207ENST00000536011 TRIM11Q96F44 468 aa13.28□□□□□ -0.28
RTN3-207ENST00000536011 IL12RB2Q99665 862 aa13.28□□□□□ -0.28
RTN3-207ENST00000536011 MAGEB5Q9BZ81 275 aa13.28□□□□□ -0.28
RTN3-207ENST00000536011 SLC13A1Q9BZW2 595 aa13.28□□□□□ -0.28
RTN3-207ENST00000536011 NOL6Q9H6R4 1146 aaKnown RBP13.28□□□□□ -0.28
RTN3-207ENST00000536011 AP4E1Q9UPM8 1137 aa13.28□□□□□ -0.28
RTN3-207ENST00000536011 SCINQ9Y6U3 715 aa13.28□□□□□ -0.28
RTN3-207ENST00000536011 ARHGAP42A6NI28 874 aa13.27□□□□□ -0.29
RTN3-207ENST00000536011 TMEM110-MUSTN1A8MSY1 372 aa13.27□□□□□ -0.29
RTN3-207ENST00000536011 EEF2KO00418 725 aaKnown RBP13.27□□□□□ -0.29
RTN3-207ENST00000536011 TPP1O14773 563 aa13.27□□□□□ -0.29
RTN3-207ENST00000536011 DAPK3O43293 454 aa13.27□□□□□ -0.29
RTN3-207ENST00000536011 GIMD1P0DJR0 217 aa13.27□□□□□ -0.29
RTN3-207ENST00000536011 ATP1A3P13637 1013 aa13.27□□□□□ -0.29
RTN3-207ENST00000536011 BLKP51451 505 aa13.27□□□□□ -0.29
RTN3-207ENST00000536011 MAMLD1Q13495 774 aa13.27□□□□□ -0.29
RTN3-207ENST00000536011 BRAT1Q6PJG6 821 aa13.27□□□□□ -0.29
RTN3-207ENST00000536011 KDM7AQ6ZMT4 941 aa13.27□□□□□ -0.29
RTN3-207ENST00000536011 MACC1Q6ZN28 852 aa13.27□□□□□ -0.29
RTN3-207ENST00000536011 IRF2BP2Q7Z5L9 587 aa13.27□□□□□ -0.29
RTN3-207ENST00000536011 VPS36Q86VN1 386 aa13.27□□□□□ -0.29
RTN3-207ENST00000536011 PSTKQ8IV42 348 aaKnown RBP13.27□□□□□ -0.29
RTN3-207ENST00000536011 LSMEM2Q8N112 164 aa13.27□□□□□ -0.29
RTN3-207ENST00000536011 ATL2Q8NHH9 583 aa13.27□□□□□ -0.29
RTN3-207ENST00000536011 TPCN2Q8NHX9 752 aa13.27□□□□□ -0.29
RTN3-207ENST00000536011 SNIP1Q8TAD8 396 aaKnown RBP13.27□□□□□ -0.29
RTN3-207ENST00000536011 MAPK15Q8TD08 544 aa13.27□□□□□ -0.29
RTN3-207ENST00000536011 LMX1AQ8TE12 382 aa13.27□□□□□ -0.29
RTN3-207ENST00000536011 CENPTQ96BT3 561 aa13.27□□□□□ -0.29
RTN3-207ENST00000536011 GRAMD1AQ96CP6 724 aa13.27□□□□□ -0.29
RTN3-207ENST00000536011 ZNF641Q96N77 438 aaPredicted RBP13.27□□□□□ -0.29
RTN3-207ENST00000536011 TUBGCP5Q96RT8 1024 aa13.27□□□□□ -0.29
RTN3-207ENST00000536011 HSD3B7Q9H2F3 369 aa13.27□□□□□ -0.29
RTN3-207ENST00000536011 DHX35Q9H5Z1 703 aaKnown RBP13.27□□□□□ -0.29
RTN3-207ENST00000536011 ATP13A3Q9H7F0 1226 aa13.27□□□□□ -0.29
RTN3-207ENST00000536011 APOBEC3BQ9UH17 382 aaKnown RBP13.27□□□□□ -0.29
RTN3-207ENST00000536011 GGT7Q9UJ14 662 aa13.27□□□□□ -0.29
RTN3-207ENST00000536011 SALL4Q9UJQ4 1053 aa13.27□□□□□ -0.29
RTN3-207ENST00000536011 LRRC53A6NM62 1247 aa13.26□□□□□ -0.29
RTN3-207ENST00000536011 EIF4E1BA6NMX2 242 aaKnown RBP13.26□□□□□ -0.29
RTN3-207ENST00000536011 SPINT1O43278 529 aa13.26□□□□□ -0.29
RTN3-207ENST00000536011 PRPSAP2O60256 369 aa13.26□□□□□ -0.29
RTN3-207ENST00000536011 BRINP1O60477 761 aa13.26□□□□□ -0.29
RTN3-207ENST00000536011 PRAMEF11O60813 436 aa13.26□□□□□ -0.29
RTN3-207ENST00000536011 MMP20O60882 483 aa13.26□□□□□ -0.29
RTN3-207ENST00000536011 NEBLO76041 1014 aa13.26□□□□□ -0.29
RTN3-207ENST00000536011 GZMAP12544 262 aa13.26□□□□□ -0.29
RTN3-207ENST00000536011 HTR1BP28222 390 aa13.26□□□□□ -0.29
RTN3-207ENST00000536011 SERPINA4P29622 427 aa13.26□□□□□ -0.29
RTN3-207ENST00000536011 EIF2S3P41091 472 aaKnown RBP13.26□□□□□ -0.29
RTN3-207ENST00000536011 PEX5P50542 639 aa13.26□□□□□ -0.29
RTN3-207ENST00000536011 RFTN1Q14699 578 aaPredicted RBP13.26□□□□□ -0.29
RTN3-207ENST00000536011 LRRC14Q15048 493 aa13.26□□□□□ -0.29
RTN3-207ENST00000536011 NR0B2Q15466 257 aa13.26□□□□□ -0.29
RTN3-207ENST00000536011 ANO6Q4KMQ2 910 aa13.26□□□□□ -0.29
RTN3-207ENST00000536011 ERMARDQ5T6L9 678 aa13.26□□□□□ -0.29
RTN3-207ENST00000536011 CDCP2Q5VXM1 449 aa13.26□□□□□ -0.29
RTN3-207ENST00000536011 PLEKHA7Q6IQ23 1121 aa13.26□□□□□ -0.29
RTN3-207ENST00000536011 PAF1Q8N7H5 531 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms