RNA–Protein interactions for RNA: ENST00000535668.1

CLSTN3-206, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-206ENST00000535668 ACVRL1P37023 503 aa11.36□□□□□ -0.59
CLSTN3-206ENST00000535668 HDAC4P56524 1084 aa11.36□□□□□ -0.59
CLSTN3-206ENST00000535668 CXADRP78310 365 aa11.36□□□□□ -0.59
CLSTN3-206ENST00000535668 CCDC173Q0VFZ6 552 aa11.36□□□□□ -0.59
CLSTN3-206ENST00000535668 NR0B2Q15466 257 aa11.36□□□□□ -0.59
CLSTN3-206ENST00000535668 GUSBP11Q6P575 273 aa11.36□□□□□ -0.59
CLSTN3-206ENST00000535668 OGFOD3Q6PK18 319 aa11.36□□□□□ -0.59
CLSTN3-206ENST00000535668 GDPD4Q6W3E5 623 aa11.36□□□□□ -0.59
CLSTN3-206ENST00000535668 PHF13Q86YI8 300 aaPredicted RBP11.36□□□□□ -0.59
CLSTN3-206ENST00000535668 SLC35F3Q8IY50 421 aa11.36□□□□□ -0.59
CLSTN3-206ENST00000535668 ARL14Q8N4G2 192 aa11.36□□□□□ -0.59
CLSTN3-206ENST00000535668 TP53I13Q8NBR0 393 aaPredicted RBP11.36□□□□□ -0.59
CLSTN3-206ENST00000535668 TMEM159Q96B96 161 aa11.36□□□□□ -0.59
CLSTN3-206ENST00000535668 VCPIP1Q96JH7 1222 aa11.36□□□□□ -0.59
CLSTN3-206ENST00000535668 GDAP1L1Q96MZ0 367 aa11.36□□□□□ -0.59
CLSTN3-206ENST00000535668 ZNF641Q96N77 438 aaPredicted RBP11.36□□□□□ -0.59
CLSTN3-206ENST00000535668 EIF3CQ99613 913 aaKnown RBP11.36□□□□□ -0.59
CLSTN3-206ENST00000535668 LRRC61Q9BV99 259 aa11.36□□□□□ -0.59
CLSTN3-206ENST00000535668 GANQ9H2C0 597 aa11.36□□□□□ -0.59
CLSTN3-206ENST00000535668 DONSONQ9NYP3 566 aa11.36□□□□□ -0.59
CLSTN3-206ENST00000535668 APPL1Q9UKG1 709 aa11.36□□□□□ -0.59
CLSTN3-206ENST00000535668 HPCAL4Q9UM19 191 aa11.36□□□□□ -0.59
CLSTN3-206ENST00000535668 FCF1Q9Y324 198 aaKnown RBP11.36□□□□□ -0.59
CLSTN3-206ENST00000535668 CCDC187A0A096LP49 1063 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 LRRC10BA6NIK2 292 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 SIGLEC16A6NMB1 481 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 B8ZZF3 427 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 FAM72CH0Y354 149 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 YY2O15391 372 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 TM7SF2O76062 418 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 PLEKP08567 350 aaPredicted RBP11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 ALPIP09923 528 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 C6P13671 934 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 TIMP2P16035 220 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 CHRNB2P17787 502 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 RBMS1P29558 406 aaKnown RBP11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 SDC4P31431 198 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 IGFALSP35858 605 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 TRIM23P36406 574 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 NUMBP49757 651 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 HK3P52790 923 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 FMO1Q01740 532 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 RAD51Q06609 339 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 ELP6Q0PNE2 266 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 CLPPQ16740 277 aaPredicted RBP11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 PARP15Q460N3 678 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 TCP11X2Q5H9J9 407 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 FAM72AQ5TYM5 149 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 FAM72DQ6L9T8 149 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 EFL1Q7Z2Z2 1120 aaKnown RBP11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 FAM72BQ86X60 149 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 PHACTR4Q8IZ21 702 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 ARL10Q8N8L6 244 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 RTL3Q8N8U3 475 aaKnown RBP11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 C3orf20Q8ND61 904 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 RXFP2Q8WXD0 754 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 TBC1D31Q96DN5 1066 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 MED8Q96G25 268 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 MYOCQ99972 504 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 CLPBQ9H078 707 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 APOBEC3BQ9UH17 382 aaKnown RBP11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 DACH1Q9UI36 760 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 ATXN7L1Q9ULK2 861 aaPredicted RBP11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 SATB2Q9UPW6 733 aa11.35□□□□□ -0.59
CLSTN3-206ENST00000535668 BSNQ9UPA5 3926 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 TNFRSF10CO14798 259 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 NVLO15381 856 aaKnown RBP11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 ITGB2P05107 769 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 UGT2B4P06133 528 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 MMEP08473 750 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 TSHRP16473 764 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 EIF4A3P38919 411 aaKnown RBP11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 THOP1P52888 689 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 PPARDQ03181 441 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 ZFP36L1Q07352 338 aaKnown RBP11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 NSUN2Q08J23 767 aaKnown RBP eCLIP11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 MAPK8IP2Q13387 824 aaPredicted RBP11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 SERINC3Q13530 473 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 ELOCQ15369 112 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 CDKN3Q16667 212 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 UGP2Q16851 508 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 ZNF542PQ5EBM4 170 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 PRRT3Q5FWE3 981 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 PERM1Q5SV97 790 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 PPP1R15BQ5SWA1 713 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 CDKAL1Q5VV42 579 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 NAA35Q5VZE5 725 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 BRAT1Q6PJG6 821 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 CLEC17AQ6ZS10 378 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 TTC7BQ86TV6 843 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 C17orf82Q86X59 251 aaPredicted RBP11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 DRC7Q8IY82 874 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 GPR156Q8NFN8 814 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 ENOX1Q8TC92 643 aaKnown RBP11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 SCG3Q8WXD2 468 aaKnown RBP11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 CPA5Q8WXQ8 436 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 ECHDC3Q96DC8 303 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 ATXN7L3BQ96GX2 97 aa11.34□□□□□ -0.59
CLSTN3-206ENST00000535668 KLHL32Q96NJ5 620 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms