RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 C1QTNF7Q9BXJ2 289 aa18.04■□□□□ 0.48
PCF11-206ENST00000533018 GPR27Q9NS67 375 aa18.04■□□□□ 0.48
PCF11-206ENST00000533018 KLF15Q9UIH9 416 aa18.04■□□□□ 0.48
PCF11-206ENST00000533018 PCDHB1Q9Y5F3 818 aa18.04■□□□□ 0.48
PCF11-206ENST00000533018 SHROOM3Q8TF72 1996 aa18.04■□□□□ 0.48
PCF11-206ENST00000533018 TCRBV5S1A1TA0A578 114 aa18.03■□□□□ 0.48
PCF11-206ENST00000533018 FGF10O15520 208 aaPredicted RBP18.03■□□□□ 0.48
PCF11-206ENST00000533018 SPINT1O43278 529 aa18.03■□□□□ 0.48
PCF11-206ENST00000533018 GP1BAP07359 652 aa18.03■□□□□ 0.48
PCF11-206ENST00000533018 ATP1A3P13637 1013 aa18.03■□□□□ 0.48
PCF11-206ENST00000533018 ITIH2P19823 946 aa18.03■□□□□ 0.48
PCF11-206ENST00000533018 ACTN2P35609 894 aa18.03■□□□□ 0.48
PCF11-206ENST00000533018 TPI1P60174 286 aa18.03■□□□□ 0.48
PCF11-206ENST00000533018 PFN3P60673 137 aa18.03■□□□□ 0.48
PCF11-206ENST00000533018 SOWAHCQ53LP3 525 aaPredicted RBP18.03■□□□□ 0.48
PCF11-206ENST00000533018 TPRG1LQ5T0D9 272 aa18.03■□□□□ 0.48
PCF11-206ENST00000533018 CCDC183Q5T5S1 534 aa18.03■□□□□ 0.48
PCF11-206ENST00000533018 CFAP58Q5T655 872 aa18.03■□□□□ 0.48
PCF11-206ENST00000533018 ZCCHC8Q6NZY4 707 aaKnown RBP18.03■□□□□ 0.48
PCF11-206ENST00000533018 MCOLN2Q8IZK6 566 aa18.03■□□□□ 0.48
PCF11-206ENST00000533018 FAM181AQ8N9Y4 354 aa18.03■□□□□ 0.48
PCF11-206ENST00000533018 BTN2A2Q8WVV5 523 aa18.03■□□□□ 0.48
PCF11-206ENST00000533018 FGF11Q92914 225 aa18.03■□□□□ 0.48
PCF11-206ENST00000533018 DEPDC7Q96QD5 511 aa18.03■□□□□ 0.48
PCF11-206ENST00000533018 IL12RB2Q99665 862 aa18.03■□□□□ 0.48
PCF11-206ENST00000533018 USP29Q9HBJ7 922 aa18.03■□□□□ 0.48
PCF11-206ENST00000533018 UBA2Q9UBT2 640 aaPredicted RBP18.03■□□□□ 0.48
PCF11-206ENST00000533018 AREL1O15033 823 aa18.02■□□□□ 0.48
PCF11-206ENST00000533018 INSIG1O15503 277 aa18.02■□□□□ 0.48
PCF11-206ENST00000533018 DAPK3O43293 454 aa18.02■□□□□ 0.48
PCF11-206ENST00000533018 PIGNO95427 931 aa18.02■□□□□ 0.48
PCF11-206ENST00000533018 TIMP2P16035 220 aa18.02■□□□□ 0.48
PCF11-206ENST00000533018 PSMA2P25787 234 aa18.02■□□□□ 0.48
PCF11-206ENST00000533018 EIF2B5Q13144 721 aaKnown RBP18.02■□□□□ 0.48
PCF11-206ENST00000533018 NCAPHQ15003 741 aa18.02■□□□□ 0.48
PCF11-206ENST00000533018 KLHL40Q2TBA0 621 aa18.02■□□□□ 0.48
PCF11-206ENST00000533018 PPP1R15BQ5SWA1 713 aa18.02■□□□□ 0.48
PCF11-206ENST00000533018 FAXCQ5TGI0 409 aa18.02■□□□□ 0.48
PCF11-206ENST00000533018 DNAAF5Q86Y56 855 aa18.02■□□□□ 0.48
PCF11-206ENST00000533018 UMODL1-AS1Q8N2C9 162 aa18.02■□□□□ 0.48
PCF11-206ENST00000533018 CENPTQ96BT3 561 aa18.02■□□□□ 0.48
PCF11-206ENST00000533018 CELF6Q96J87 481 aaKnown RBP18.02■□□□□ 0.48
PCF11-206ENST00000533018 NAT10Q9H0A0 1025 aaKnown RBP18.02■□□□□ 0.48
PCF11-206ENST00000533018 PARVAQ9NVD7 372 aa18.02■□□□□ 0.48
PCF11-206ENST00000533018 GPATCH2LQ9NWQ4 482 aa18.02■□□□□ 0.48
PCF11-206ENST00000533018 DONSONQ9NYP3 566 aa18.02■□□□□ 0.48
PCF11-206ENST00000533018 TAS2R14Q9NYV8 317 aa18.02■□□□□ 0.48
PCF11-206ENST00000533018 NCKIPSDQ9NZQ3 722 aa18.02■□□□□ 0.48
PCF11-206ENST00000533018 SPASTQ9UBP0 616 aa18.02■□□□□ 0.48
PCF11-206ENST00000533018 APOBEC3BQ9UH17 382 aaKnown RBP18.02■□□□□ 0.48
PCF11-206ENST00000533018 CSNK1G3Q9Y6M4 447 aa18.02■□□□□ 0.48
PCF11-206ENST00000533018 WASH4PA8MWX3 477 aa18.01■□□□□ 0.47
PCF11-206ENST00000533018 USP12O75317 370 aa18.01■□□□□ 0.47
PCF11-206ENST00000533018 MPOP05164 745 aa18.01■□□□□ 0.47
PCF11-206ENST00000533018 IGFALSP35858 605 aa18.01■□□□□ 0.47
PCF11-206ENST00000533018 EIF4A3P38919 411 aaKnown RBP18.01■□□□□ 0.47
PCF11-206ENST00000533018 ADKP55263 362 aaKnown RBP18.01■□□□□ 0.47
PCF11-206ENST00000533018 OGDHQ02218 1023 aa18.01■□□□□ 0.47
PCF11-206ENST00000533018 TYRO3Q06418 890 aa18.01■□□□□ 0.47
PCF11-206ENST00000533018 ELP6Q0PNE2 266 aa18.01■□□□□ 0.47
PCF11-206ENST00000533018 CCDC173Q0VFZ6 552 aa18.01■□□□□ 0.47
PCF11-206ENST00000533018 C1orf61Q13536 156 aa18.01■□□□□ 0.47
PCF11-206ENST00000533018 ACAP1Q15027 740 aa18.01■□□□□ 0.47
PCF11-206ENST00000533018 CYTH1Q15438 398 aa18.01■□□□□ 0.47
PCF11-206ENST00000533018 PRRT3Q5FWE3 981 aa18.01■□□□□ 0.47
PCF11-206ENST00000533018 PPP1R2P3Q6NXS1 205 aa18.01■□□□□ 0.47
PCF11-206ENST00000533018 APTXQ7Z2E3 356 aaKnown RBP18.01■□□□□ 0.47
PCF11-206ENST00000533018 IRF2BP2Q7Z5L9 587 aa18.01■□□□□ 0.47
PCF11-206ENST00000533018 RBFAQ8N0V3 343 aa18.01■□□□□ 0.47
PCF11-206ENST00000533018 PAF1Q8N7H5 531 aa18.01■□□□□ 0.47
PCF11-206ENST00000533018 GLMNQ92990 594 aa18.01■□□□□ 0.47
PCF11-206ENST00000533018 VOPP1Q96AW1 172 aa18.01■□□□□ 0.47
PCF11-206ENST00000533018 CPEB1Q9BZB8 566 aaKnown RBP18.01■□□□□ 0.47
PCF11-206ENST00000533018 SLC13A1Q9BZW2 595 aa18.01■□□□□ 0.47
PCF11-206ENST00000533018 HSD3B7Q9H2F3 369 aa18.01■□□□□ 0.47
PCF11-206ENST00000533018 TCEAL2Q9H3H9 227 aaPredicted RBP18.01■□□□□ 0.47
PCF11-206ENST00000533018 DHX35Q9H5Z1 703 aaKnown RBP18.01■□□□□ 0.47
PCF11-206ENST00000533018 MBNL1Q9NR56 388 aaKnown RBP18.01■□□□□ 0.47
PCF11-206ENST00000533018 DKK3Q9UBP4 350 aa18.01■□□□□ 0.47
PCF11-206ENST00000533018 PCSK1NQ9UHG2 260 aa18.01■□□□□ 0.47
PCF11-206ENST00000533018 AP4E1Q9UPM8 1137 aa18.01■□□□□ 0.47
PCF11-206ENST00000533018 MFHAS1Q9Y4C4 1052 aa18.01■□□□□ 0.47
PCF11-206ENST00000533018 LRRK1Q38SD2 2015 aa18.01■□□□□ 0.47
PCF11-206ENST00000533018 RP1P56715 2156 aa18■□□□□ 0.47
PCF11-206ENST00000533018 LY6G6EA0A0G2JKS1 128 aa18■□□□□ 0.47
PCF11-206ENST00000533018 J3KR12 359 aa18■□□□□ 0.47
PCF11-206ENST00000533018 EEF2KO00418 725 aaKnown RBP18■□□□□ 0.47
PCF11-206ENST00000533018 TEX33O43247 280 aa18■□□□□ 0.47
PCF11-206ENST00000533018 ATMINO43313 823 aaPredicted RBP18■□□□□ 0.47
PCF11-206ENST00000533018 CSO75390 466 aaKnown RBP18■□□□□ 0.47
PCF11-206ENST00000533018 MBD3O95983 291 aa18■□□□□ 0.47
PCF11-206ENST00000533018 YPEL5P62699 121 aa18■□□□□ 0.47
PCF11-206ENST00000533018 MAMLD1Q13495 774 aa18■□□□□ 0.47
PCF11-206ENST00000533018 NR0B2Q15466 257 aa18■□□□□ 0.47
PCF11-206ENST00000533018 TBC1D25Q3MII6 688 aa18■□□□□ 0.47
PCF11-206ENST00000533018 CDCP2Q5VXM1 449 aa18■□□□□ 0.47
PCF11-206ENST00000533018 ERAP2Q6P179 960 aa18■□□□□ 0.47
PCF11-206ENST00000533018 CRTC1Q6UUV9 634 aa18■□□□□ 0.47
PCF11-206ENST00000533018 EFL1Q7Z2Z2 1120 aaKnown RBP18■□□□□ 0.47
PCF11-206ENST00000533018 PHACTR4Q8IZ21 702 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms