RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 MARCH8Q5T0T0 291 aa9.74□□□□□ -0.85
VCAN-210ENST00000513960 ZNF618Q5T7W0 954 aa9.74□□□□□ -0.85
VCAN-210ENST00000513960 FSTL4Q6MZW2 842 aa9.74□□□□□ -0.85
VCAN-210ENST00000513960 MAMDC4Q6UXC1 1216 aa9.74□□□□□ -0.85
VCAN-210ENST00000513960 SLC7A5P1Q8MH63 180 aa9.74□□□□□ -0.85
VCAN-210ENST00000513960 APPL2Q8NEU8 664 aa9.74□□□□□ -0.85
VCAN-210ENST00000513960 CANT1Q8WVQ1 401 aa9.74□□□□□ -0.85
VCAN-210ENST00000513960 KHSRPQ92945 711 aaKnown RBP eCLIP9.74□□□□□ -0.85
VCAN-210ENST00000513960 CXCL16Q9H2A7 254 aa9.74□□□□□ -0.85
VCAN-210ENST00000513960 NXF3Q9H4D5 531 aaKnown RBP9.74□□□□□ -0.85
VCAN-210ENST00000513960 PCDH12Q9NPG4 1184 aa9.74□□□□□ -0.85
VCAN-210ENST00000513960 KLK14Q9P0G3 267 aa9.74□□□□□ -0.85
VCAN-210ENST00000513960 GMPR2Q9P2T1 348 aaKnown RBP9.74□□□□□ -0.85
VCAN-210ENST00000513960 CNOT6Q9ULM6 557 aaKnown RBP9.74□□□□□ -0.85
VCAN-210ENST00000513960 PIN4Q9Y237 131 aaKnown RBP9.74□□□□□ -0.85
VCAN-210ENST00000513960 RAP2CQ9Y3L5 183 aa9.74□□□□□ -0.85
VCAN-210ENST00000513960 MGAMO43451 1857 aa9.74□□□□□ -0.85
VCAN-210ENST00000513960 LRRC37A2A6NM11 1700 aa9.74□□□□□ -0.85
VCAN-210ENST00000513960 NRP1O14786 923 aa9.74□□□□□ -0.85
VCAN-210ENST00000513960 HUS1O60921 280 aa9.74□□□□□ -0.85
VCAN-210ENST00000513960 BCAS2O75934 225 aaPredicted RBP9.74□□□□□ -0.85
VCAN-210ENST00000513960 ESRRBO95718 433 aa9.74□□□□□ -0.85
VCAN-210ENST00000513960 SNAI1O95863 264 aaPredicted RBP9.74□□□□□ -0.85
VCAN-210ENST00000513960 JUNP05412 331 aaKnown RBP9.74□□□□□ -0.85
VCAN-210ENST00000513960 CYP2C9P11712 490 aa9.74□□□□□ -0.85
VCAN-210ENST00000513960 SMPD1P17405 629 aa9.74□□□□□ -0.85
VCAN-210ENST00000513960 HOXA11P31270 313 aaPredicted RBP9.74□□□□□ -0.85
VCAN-210ENST00000513960 DPP6P42658 865 aa9.74□□□□□ -0.85
VCAN-210ENST00000513960 LSM3P62310 102 aaKnown RBP9.74□□□□□ -0.85
VCAN-210ENST00000513960 PRKAA1Q13131 559 aa9.74□□□□□ -0.85
VCAN-210ENST00000513960 SPIDRQ14159 915 aa9.74□□□□□ -0.85
VCAN-210ENST00000513960 PYROXD2Q8N2H3 581 aa9.74□□□□□ -0.85
VCAN-210ENST00000513960 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.74□□□□□ -0.85
VCAN-210ENST00000513960 PHF21BQ96EK2 531 aa9.74□□□□□ -0.85
VCAN-210ENST00000513960 MFSD3Q96ES6 412 aa9.74□□□□□ -0.85
VCAN-210ENST00000513960 TRIM8Q9BZR9 551 aa9.74□□□□□ -0.85
VCAN-210ENST00000513960 ABHD16BQ9H3Z7 469 aa9.74□□□□□ -0.85
VCAN-210ENST00000513960 ZFYVE28Q9HCC9 887 aa9.74□□□□□ -0.85
VCAN-210ENST00000513960 PRM3Q9NNZ6 103 aa9.74□□□□□ -0.85
VCAN-210ENST00000513960 CHST12Q9NRB3 414 aa9.74□□□□□ -0.85
VCAN-210ENST00000513960 COPG1Q9Y678 874 aaKnown RBP9.74□□□□□ -0.85
VCAN-210ENST00000513960 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.73□□□□□ -0.85
VCAN-210ENST00000513960 ZNF487B1APH4 448 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 DYNC1LI2O43237 492 aaPredicted RBP9.73□□□□□ -0.85
VCAN-210ENST00000513960 GCATO75600 419 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 GOT1P17174 413 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 GJA5P36382 358 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 CDK18Q07002 472 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 STX5Q13190 355 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 TMEM214Q6NUQ4 689 aaKnown RBP9.73□□□□□ -0.85
VCAN-210ENST00000513960 Q6ZNX1 250 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 SLC2A14Q8TDB8 520 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 TNIP3Q96KP6 325 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 CSPG4P5Q96PW8 444 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 SACM1LQ9NTJ5 587 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 TBCCD1Q9NVR7 557 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 IGSF9Q9P2J2 1179 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 CITO14578 2027 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 UBDO15205 165 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 INPP4BO15327 924 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 HCRTO43612 131 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 GSTT2P0CG29 244 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 GSTT2BP0CG30 244 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 PRDX6P30041 224 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 TAF6P49848 677 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 SULT1E1P49888 294 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 CD300CQ08708 224 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 MTA1Q13330 715 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 TRIM25Q14258 630 aaKnown RBP9.73□□□□□ -0.85
VCAN-210ENST00000513960 C9orf131Q5VYM1 1079 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 KCTD8Q6ZWB6 473 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 SPPL2CQ8IUH8 684 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 SPNS2Q8IVW8 549 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 OR9I1Q8NGQ6 314 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 PPP1R13LQ8WUF5 828 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 TAMM41Q96BW9 452 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 HEPHQ9BQS7 1158 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 XPR1Q9UBH6 696 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 CROTQ9UKG9 612 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 ST14Q9Y5Y6 855 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 SQORQ9Y6N5 450 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 OTOFQ9HC10 1997 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 CCL15-CCL14A0A0B4J2E2 113 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 HTR3EA5X5Y0 456 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 NEMP2A6NFY4 417 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 SOCS2O14508 198 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 FUCA1P04066 466 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 TPSB2P20231 275 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 JAK1P23458 1154 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 PNPLA4P41247 253 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 RAD23AP54725 363 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 TPSAB1Q15661 275 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 CCL15Q16663 113 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 CCDC80Q76M96 950 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 ZNF467Q7Z7K2 595 aaPredicted RBP9.73□□□□□ -0.85
VCAN-210ENST00000513960 SNX29P2Q8IUI4 249 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 SLC41A1Q8IVJ1 513 aa9.73□□□□□ -0.85
VCAN-210ENST00000513960 ZC3H7AQ8IWR0 971 aaKnown RBP9.73□□□□□ -0.85
VCAN-210ENST00000513960 CHERPQ8IWX8 916 aaKnown RBP9.73□□□□□ -0.85
VCAN-210ENST00000513960 NRBF2Q96F24 287 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms