RNA–Protein interactions for RNA: ENST00000504203.5

MATR3-233, Transcript of matrin 3, human

TSL 2 BASIC

Gene MATR3, Length 2,243 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-233	ENST00000504203	PDCD6IP	Q8WUM4	868 aa	Known RBP	13.16	□□□□□ -0.3
MATR3-233	ENST00000504203	PSMG2	Q969U7	264 aa		13.16	□□□□□ -0.3
MATR3-233	ENST00000504203	WDR55	Q9H6Y2	383 aa	Predicted RBP	13.16	□□□□□ -0.3
MATR3-233	ENST00000504203	ANGPTL2	Q9UKU9	493 aa		13.16	□□□□□ -0.3
MATR3-233	ENST00000504203	GOLGA8Q	A0A0J9YX86	632 aa		13.16	□□□□□ -0.3
MATR3-233	ENST00000504203	GOLGA8O	A6NCC3	632 aa		13.16	□□□□□ -0.3
MATR3-233	ENST00000504203	GOLGA8N	F8WBI6	632 aa		13.16	□□□□□ -0.3
MATR3-233	ENST00000504203	SLCO1B7	G3V0H7	640 aa		13.16	□□□□□ -0.3
MATR3-233	ENST00000504203	IGLV3-27	P01718	113 aa		13.16	□□□□□ -0.3
MATR3-233	ENST00000504203	CPB1	P15086	417 aa		13.16	□□□□□ -0.3
MATR3-233	ENST00000504203	ANPEP	P15144	967 aa		13.16	□□□□□ -0.3
MATR3-233	ENST00000504203	LEPR	P48357	1165 aa	Known RBP	13.16	□□□□□ -0.3
MATR3-233	ENST00000504203	DSC2	Q02487	901 aa		13.16	□□□□□ -0.3
MATR3-233	ENST00000504203	LSM12	Q3MHD2	195 aa	Known RBP	13.16	□□□□□ -0.3
MATR3-233	ENST00000504203	ZNF789	Q5FWF6	425 aa		13.16	□□□□□ -0.3
MATR3-233	ENST00000504203	RBM20	Q5T481	1227 aa	Known RBP	13.16	□□□□□ -0.3
MATR3-233	ENST00000504203	ARRDC2	Q8TBH0	407 aa		13.16	□□□□□ -0.3
MATR3-233	ENST00000504203	HEXDC	Q8WVB3	486 aa		13.16	□□□□□ -0.3
MATR3-233	ENST00000504203	FBXO32	Q969P5	355 aa		13.16	□□□□□ -0.3
MATR3-233	ENST00000504203	FAM136A	Q96C01	138 aa		13.16	□□□□□ -0.3
MATR3-233	ENST00000504203	GLT1D1	Q96MS3	346 aa		13.16	□□□□□ -0.3
MATR3-233	ENST00000504203	LENG8	Q96PV6	779 aa	Predicted RBP	13.16	□□□□□ -0.3
MATR3-233	ENST00000504203	FAM193B	Q96PV7	902 aa	Predicted RBP	13.16	□□□□□ -0.3
MATR3-233	ENST00000504203	MRPL57	Q9BQC6	102 aa	Known RBP	13.16	□□□□□ -0.3
MATR3-233	ENST00000504203	RTKN	Q9BST9	563 aa		13.16	□□□□□ -0.3
MATR3-233	ENST00000504203	ZNF385D	Q9H6B1	395 aa		13.16	□□□□□ -0.3
MATR3-233	ENST00000504203	IGSF5	Q9NSI5	407 aa		13.16	□□□□□ -0.3
MATR3-233	ENST00000504203	VTI1B	Q9UEU0	232 aa		13.16	□□□□□ -0.3
MATR3-233	ENST00000504203	CDH22	Q9UJ99	828 aa		13.16	□□□□□ -0.3
MATR3-233	ENST00000504203	MROH6	A6NGR9	719 aa		13.15	□□□□□ -0.3
MATR3-233	ENST00000504203	OR6C75	A6NL08	312 aa		13.15	□□□□□ -0.3
MATR3-233	ENST00000504203	NPHS1	O60500	1241 aa		13.15	□□□□□ -0.3
MATR3-233	ENST00000504203	FKBP6	O75344	327 aa		13.15	□□□□□ -0.3
MATR3-233	ENST00000504203	SOAT2	O75908	522 aa		13.15	□□□□□ -0.3
MATR3-233	ENST00000504203	ALDH1A1	P00352	501 aa		13.15	□□□□□ -0.3
MATR3-233	ENST00000504203	AP2B1	P63010	937 aa		13.15	□□□□□ -0.3
MATR3-233	ENST00000504203	PEX6	Q13608	980 aa		13.15	□□□□□ -0.3
MATR3-233	ENST00000504203	SLC14A2	Q15849	920 aa		13.15	□□□□□ -0.3
MATR3-233	ENST00000504203	GREB1	Q4ZG55	1949 aa		13.15	□□□□□ -0.3
MATR3-233	ENST00000504203	RASIP1	Q5U651	963 aa		13.15	□□□□□ -0.3
MATR3-233	ENST00000504203	RAP1GAP2	Q684P5	730 aa		13.15	□□□□□ -0.3
MATR3-233	ENST00000504203	ZNF280D	Q6N043	979 aa		13.15	□□□□□ -0.3
MATR3-233	ENST00000504203	AAGAB	Q6PD74	315 aa		13.15	□□□□□ -0.3
MATR3-233	ENST00000504203	GALNT7	Q86SF2	657 aa		13.15	□□□□□ -0.3
MATR3-233	ENST00000504203	PGBD5	Q8N414	524 aa		13.15	□□□□□ -0.3
MATR3-233	ENST00000504203	CPSF7	Q8N684	471 aa	Known RBP	13.15	□□□□□ -0.3
MATR3-233	ENST00000504203	KDM1B	Q8NB78	822 aa		13.15	□□□□□ -0.3
MATR3-233	ENST00000504203	TXNDC5	Q8NBS9	432 aa	Known RBP	13.15	□□□□□ -0.3
MATR3-233	ENST00000504203	CALML6	Q8TD86	181 aa		13.15	□□□□□ -0.3
MATR3-233	ENST00000504203	MIEF2	Q96C03	454 aa		13.15	□□□□□ -0.3
MATR3-233	ENST00000504203	PABPC5	Q96DU9	382 aa	Known RBP	13.15	□□□□□ -0.3
MATR3-233	ENST00000504203	OLFM1	Q99784	485 aa		13.15	□□□□□ -0.3
MATR3-233	ENST00000504203	OSBPL1A	Q9BXW6	950 aa		13.15	□□□□□ -0.3
MATR3-233	ENST00000504203	GPR62	Q9BZJ7	368 aa		13.15	□□□□□ -0.3
MATR3-233	ENST00000504203	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	13.15	□□□□□ -0.3	2e-11	■■■□□ 18.4
MATR3-233	ENST00000504203	OLA1	Q9NTK5	396 aa	Known RBP	13.15	□□□□□ -0.3
MATR3-233	ENST00000504203	TMEM161A	Q9NX61	479 aa		13.15	□□□□□ -0.3
MATR3-233	ENST00000504203	ARHGAP26	Q9UNA1	814 aa		13.15	□□□□□ -0.3
MATR3-233	ENST00000504203	SSX2IP	Q9Y2D8	614 aa		13.15	□□□□□ -0.3
MATR3-233	ENST00000504203	COL6A1	P12109	1028 aa		13.15	□□□□□ -0.31
MATR3-233	ENST00000504203	CD1E	P15812	388 aa		13.15	□□□□□ -0.31
MATR3-233	ENST00000504203	EPHA3	P29320	983 aa		13.15	□□□□□ -0.31
MATR3-233	ENST00000504203	DNAJB13	P59910	316 aa		13.15	□□□□□ -0.31
MATR3-233	ENST00000504203	ASPH	Q12797	758 aa		13.15	□□□□□ -0.31
MATR3-233	ENST00000504203	CUL3	Q13618	768 aa		13.15	□□□□□ -0.31
MATR3-233	ENST00000504203	FAM171A1	Q5VUB5	890 aa		13.15	□□□□□ -0.31
MATR3-233	ENST00000504203	ADGRG6	Q86SQ4	1221 aa		13.15	□□□□□ -0.31
MATR3-233	ENST00000504203	MIB1	Q86YT6	1006 aa		13.15	□□□□□ -0.31
MATR3-233	ENST00000504203	KBTBD2	Q8IY47	623 aa		13.15	□□□□□ -0.31
MATR3-233	ENST00000504203	DEFB107A	Q8IZN7	70 aa		13.15	□□□□□ -0.31
MATR3-233	ENST00000504203	SLC43A3	Q8NBI5	491 aa		13.15	□□□□□ -0.31
MATR3-233	ENST00000504203	CCDC28B	Q9BUN5	200 aa		13.15	□□□□□ -0.31
MATR3-233	ENST00000504203	NUF2	Q9BZD4	464 aa		13.15	□□□□□ -0.31
MATR3-233	ENST00000504203	CRISPLD1	Q9H336	500 aa		13.15	□□□□□ -0.31
MATR3-233	ENST00000504203	SP110	Q9HB58	689 aa		13.15	□□□□□ -0.31
MATR3-233	ENST00000504203	MARCH2	Q9P0N8	246 aa		13.15	□□□□□ -0.31
MATR3-233	ENST00000504203	LOC285095	A0A1B0GVY8	99 aa		13.14	□□□□□ -0.31
MATR3-233	ENST00000504203	MOXD2P	A6NHM9	499 aa		13.14	□□□□□ -0.31
MATR3-233	ENST00000504203	SLC22A2	O15244	555 aa		13.14	□□□□□ -0.31
MATR3-233	ENST00000504203	SLC7A4	O43246	635 aa		13.14	□□□□□ -0.31
MATR3-233	ENST00000504203	ZMPSTE24	O75844	475 aa		13.14	□□□□□ -0.31
MATR3-233	ENST00000504203	SORBS2	O94875	1100 aa	Known RBP	13.14	□□□□□ -0.31
MATR3-233	ENST00000504203	RTN3	O95197	1032 aa	Predicted RBP	13.14	□□□□□ -0.31
MATR3-233	ENST00000504203	VNN2	O95498	520 aa		13.14	□□□□□ -0.31
MATR3-233	ENST00000504203	JUN	P05412	331 aa	Known RBP	13.14	□□□□□ -0.31
MATR3-233	ENST00000504203	PIK3R1	P27986	724 aa		13.14	□□□□□ -0.31
MATR3-233	ENST00000504203	ERF	P50548	548 aa		13.14	□□□□□ -0.31
MATR3-233	ENST00000504203	CLCN5	P51795	746 aa		13.14	□□□□□ -0.31
MATR3-233	ENST00000504203	KPNA2	P52292	529 aa	Known RBP	13.14	□□□□□ -0.31
MATR3-233	ENST00000504203	IL10RB	Q08334	325 aa		13.14	□□□□□ -0.31
MATR3-233	ENST00000504203	ITK	Q08881	620 aa		13.14	□□□□□ -0.31
MATR3-233	ENST00000504203	TAF10	Q12962	218 aa		13.14	□□□□□ -0.31
MATR3-233	ENST00000504203	SERINC3	Q13530	473 aa		13.14	□□□□□ -0.31
MATR3-233	ENST00000504203	TECRL	Q5HYJ1	363 aa		13.14	□□□□□ -0.31
MATR3-233	ENST00000504203	CILP2	Q8IUL8	1156 aa		13.14	□□□□□ -0.31
MATR3-233	ENST00000504203	PPFIBP2	Q8ND30	876 aa		13.14	□□□□□ -0.31
MATR3-233	ENST00000504203	B3GALT6	Q96L58	329 aa		13.14	□□□□□ -0.31
MATR3-233	ENST00000504203	NDN	Q99608	321 aa		13.14	□□□□□ -0.31
MATR3-233	ENST00000504203	UNK	Q9C0B0	810 aa	Known RBP	13.14	□□□□□ -0.31
MATR3-233	ENST00000504203	CYP4F11	Q9HBI6	524 aa		13.14	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms