RNA–Protein interactions for RNA: ENST00000496385.5

HPS4-217, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 2,772 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-217ENST00000496385 CEP78Q5JTW2 689 aa9.15□□□□□ -0.94
HPS4-217ENST00000496385 SAMD4BQ5PRF9 694 aaKnown RBP9.15□□□□□ -0.94
HPS4-217ENST00000496385 SLC9A4Q6AI14 798 aa9.15□□□□□ -0.94
HPS4-217ENST00000496385 CTRB2Q6GPI1 263 aa9.15□□□□□ -0.94
HPS4-217ENST00000496385 HACD2Q6Y1H2 254 aa9.15□□□□□ -0.94
HPS4-217ENST00000496385 UNC5AQ6ZN44 842 aa9.15□□□□□ -0.94
HPS4-217ENST00000496385 DSG4Q86SJ6 1040 aa9.15□□□□□ -0.94
HPS4-217ENST00000496385 CCDC28AQ8IWP9 274 aa9.15□□□□□ -0.94
HPS4-217ENST00000496385 CLIP4Q8N3C7 705 aa9.15□□□□□ -0.94
HPS4-217ENST00000496385 CBR4Q8N4T8 237 aa9.15□□□□□ -0.94
HPS4-217ENST00000496385 OR2T34Q8NGX1 318 aa9.15□□□□□ -0.94
HPS4-217ENST00000496385 OR2T3Q8NH03 318 aa9.15□□□□□ -0.94
HPS4-217ENST00000496385 PHF10Q8WUB8 498 aaKnown RBP9.15□□□□□ -0.94
HPS4-217ENST00000496385 DEPDC1BQ8WUY9 529 aa9.15□□□□□ -0.94
HPS4-217ENST00000496385 RTP4Q96DX8 246 aa9.15□□□□□ -0.94
HPS4-217ENST00000496385 OR52B2Q96RD2 323 aa9.15□□□□□ -0.94
HPS4-217ENST00000496385 CSF3RQ99062 836 aa9.15□□□□□ -0.94
HPS4-217ENST00000496385 ACO2Q99798 780 aaKnown RBP9.15□□□□□ -0.94
HPS4-217ENST00000496385 EBNA1BP2Q99848 306 aaKnown RBP9.15□□□□□ -0.94
HPS4-217ENST00000496385 SEZ6LQ9BYH1 1024 aa9.15□□□□□ -0.94
HPS4-217ENST00000496385 MOCS1Q9NZB8 636 aa9.15□□□□□ -0.94
HPS4-217ENST00000496385 UBA2Q9UBT2 640 aaPredicted RBP9.15□□□□□ -0.94
HPS4-217ENST00000496385 CD300AQ9UGN4 299 aa9.15□□□□□ -0.94
HPS4-217ENST00000496385 PCDHGA7Q9Y5G6 932 aa9.15□□□□□ -0.94
HPS4-217ENST00000496385 PCDHA11Q9Y5I1 949 aa9.15□□□□□ -0.94
HPS4-217ENST00000496385 TCAF2A6NFQ2 919 aa9.15□□□□□ -0.95
HPS4-217ENST00000496385 MEIS2O14770 477 aa9.15□□□□□ -0.95
HPS4-217ENST00000496385 CNMDO75829 334 aa9.15□□□□□ -0.95
HPS4-217ENST00000496385 IL10P22301 178 aa9.15□□□□□ -0.95
HPS4-217ENST00000496385 FGFR3P22607 806 aa9.15□□□□□ -0.95
HPS4-217ENST00000496385 MMP8P22894 467 aa9.15□□□□□ -0.95
HPS4-217ENST00000496385 PPP2R2BQ00005 443 aa9.15□□□□□ -0.95
HPS4-217ENST00000496385 ROR1Q01973 937 aa9.15□□□□□ -0.95
HPS4-217ENST00000496385 VAC14Q08AM6 782 aa9.15□□□□□ -0.95
HPS4-217ENST00000496385 CDK10Q15131 360 aa9.15□□□□□ -0.95
HPS4-217ENST00000496385 SEL1L3Q68CR1 1132 aa9.15□□□□□ -0.95
HPS4-217ENST00000496385 LMBRD2Q68DH5 695 aaPredicted RBP9.15□□□□□ -0.95
HPS4-217ENST00000496385 USP17L6PQ6QN14 398 aa9.15□□□□□ -0.95
HPS4-217ENST00000496385 CRTC3Q6UUV7 619 aa9.15□□□□□ -0.95
HPS4-217ENST00000496385 HACE1Q8IYU2 909 aa9.15□□□□□ -0.95
HPS4-217ENST00000496385 SCML4Q8N228 414 aa9.15□□□□□ -0.95
HPS4-217ENST00000496385 FAM71DQ8N9W8 422 aa9.15□□□□□ -0.95
HPS4-217ENST00000496385 OR6Q1Q8NGQ2 317 aa9.15□□□□□ -0.95
HPS4-217ENST00000496385 ZSCAN18Q8TBC5 510 aaPredicted RBP9.15□□□□□ -0.95
HPS4-217ENST00000496385 DCAF4Q8WV16 495 aa9.15□□□□□ -0.95
HPS4-217ENST00000496385 CDKL2Q92772 493 aa9.15□□□□□ -0.95
HPS4-217ENST00000496385 CENPNQ96H22 339 aaPredicted RBP9.15□□□□□ -0.95
HPS4-217ENST00000496385 MFSD14AQ96MC6 490 aa9.15□□□□□ -0.95
HPS4-217ENST00000496385 ZBED2Q9BTP6 218 aa9.15□□□□□ -0.95
HPS4-217ENST00000496385 NOL6Q9H6R4 1146 aaKnown RBP9.15□□□□□ -0.95
HPS4-217ENST00000496385 NECTIN3Q9NQS3 549 aa9.15□□□□□ -0.95
HPS4-217ENST00000496385 SMPD3Q9NY59 655 aaPredicted RBP9.15□□□□□ -0.95
HPS4-217ENST00000496385 RIPK3Q9Y572 518 aa9.15□□□□□ -0.95
HPS4-217ENST00000496385 RNF103-CHMP3A0A140T963 221 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 TCRBV5S1A1TA0A578 114 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 A8MU76 341 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 AURKAO14965 403 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 POLR1CO15160 346 aaPredicted RBP9.14□□□□□ -0.95
HPS4-217ENST00000496385 ALDH1A2O94788 518 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 KDELR1P24390 212 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 FASP25445 335 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 RPL10P27635 214 aaKnown RBP9.14□□□□□ -0.95
HPS4-217ENST00000496385 ARRB2P32121 409 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 MAGEA3P43357 314 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 ARCN1P48444 511 aaKnown RBP9.14□□□□□ -0.95
HPS4-217ENST00000496385 GABARAPL2P60520 117 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 INPP5AQ14642 412 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 PDK2Q15119 407 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 SKIV2LQ15477 1246 aaKnown RBP9.14□□□□□ -0.95
HPS4-217ENST00000496385 NPTX1Q15818 432 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 SNRNP35Q16560 246 aaKnown RBP9.14□□□□□ -0.95
HPS4-217ENST00000496385 HIST2H2ACQ16777 129 aaPredicted RBP9.14□□□□□ -0.95
HPS4-217ENST00000496385 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.14□□□□□ -0.95
HPS4-217ENST00000496385 XAF1Q6GPH4 301 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 LLGL2Q6P1M3 1020 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 DARS2Q6PI48 645 aaKnown RBP9.14□□□□□ -0.95
HPS4-217ENST00000496385 C17orf99Q6UX52 265 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 ATG14Q6ZNE5 492 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 OTOP1Q7RTM1 612 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 BTLAQ7Z6A9 289 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 DHFR2Q86XF0 187 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 ELMOD2Q8IZ81 293 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 RNF148Q8N7C7 305 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 ZNF781Q8N8C0 355 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 RHOXF1Q8NHV9 184 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 TAS1R2Q8TE23 839 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 MARVELD3Q96A59 401 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 PLAC1Q9HBJ0 212 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 SPAG4Q9NPE6 437 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 AGPAT4Q9NRZ5 378 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 ZNF221Q9UK13 617 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 FEM1BQ9UK73 627 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 ADGRA2Q96PE1 1338 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 PARP14Q460N5 1801 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 TRIM13O60858 407 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 SEC24DO94855 1032 aaPredicted RBP9.14□□□□□ -0.95
HPS4-217ENST00000496385 KCNH1O95259 989 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 ADRB2P07550 413 aa9.14□□□□□ -0.95
HPS4-217ENST00000496385 RPL14P50914 215 aaKnown RBP9.14□□□□□ -0.95
HPS4-217ENST00000496385 SP3Q02447 781 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms