RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 H3BQ06 376 aaPredicted RBP21.87■■□□□ 1.09
SMC4-221ENST00000489573 RNF40O75150 1001 aa21.87■■□□□ 1.09
SMC4-221ENST00000489573 NDST3O95803 873 aa21.87■■□□□ 1.09
SMC4-221ENST00000489573 IGSF6O95976 241 aa21.87■■□□□ 1.09
SMC4-221ENST00000489573 MAPK8P45983 427 aa21.87■■□□□ 1.09
SMC4-221ENST00000489573 POU6F1Q14863 301 aa21.87■■□□□ 1.09
SMC4-221ENST00000489573 EFTUD2Q15029 972 aaKnown RBP eCLIP21.87■■□□□ 1.092e-8■■□□□ 12.6
SMC4-221ENST00000489573 AGBL2Q5U5Z8 902 aa21.87■■□□□ 1.09
SMC4-221ENST00000489573 TMEM215Q68D42 235 aa21.87■■□□□ 1.09
SMC4-221ENST00000489573 GRAMD4Q6IC98 578 aa21.87■■□□□ 1.09
SMC4-221ENST00000489573 C22orf39Q6P5X5 142 aa21.87■■□□□ 1.09
SMC4-221ENST00000489573 PTCD2Q8WV60 388 aaKnown RBP21.87■■□□□ 1.09
SMC4-221ENST00000489573 ISG20Q96AZ6 181 aaKnown RBP21.87■■□□□ 1.09
SMC4-221ENST00000489573 ZNF669Q96BR6 464 aaPredicted RBP21.87■■□□□ 1.09
SMC4-221ENST00000489573 PGM2Q96G03 612 aa21.87■■□□□ 1.09
SMC4-221ENST00000489573 TRIB3Q96RU7 358 aa21.87■■□□□ 1.09
SMC4-221ENST00000489573 KIFC1Q9BW19 673 aa21.87■■□□□ 1.09
SMC4-221ENST00000489573 ERVW-1Q9UQF0 538 aa21.87■■□□□ 1.09
SMC4-221ENST00000489573 RAI2Q9Y5P3 530 aa21.87■■□□□ 1.09
SMC4-221ENST00000489573 POC1B-GALNT4F8VUJ3 575 aa21.86■■□□□ 1.09
SMC4-221ENST00000489573 ZNF821O75541 412 aaPredicted RBP21.86■■□□□ 1.09
SMC4-221ENST00000489573 USP1O94782 785 aa21.86■■□□□ 1.09
SMC4-221ENST00000489573 CA4P22748 312 aa21.86■■□□□ 1.09
SMC4-221ENST00000489573 PRKCHP24723 683 aa21.86■■□□□ 1.09
SMC4-221ENST00000489573 GDI1P31150 447 aa21.86■■□□□ 1.09
SMC4-221ENST00000489573 CYS1Q717R9 158 aa21.86■■□□□ 1.09
SMC4-221ENST00000489573 TMEM135Q86UB9 458 aa21.86■■□□□ 1.09
SMC4-221ENST00000489573 ATP6V1G3Q96LB4 118 aa21.86■■□□□ 1.09
SMC4-221ENST00000489573 TRMT61BQ9BVS5 477 aaKnown RBP21.86■■□□□ 1.09
SMC4-221ENST00000489573 TNKS2Q9H2K2 1166 aa21.86■■□□□ 1.09
SMC4-221ENST00000489573 MRM3Q9HC36 420 aaKnown RBP21.86■■□□□ 1.09
SMC4-221ENST00000489573 DEC1Q9P2X7 70 aa21.86■■□□□ 1.09
SMC4-221ENST00000489573 SLC24A2Q9UI40 661 aa21.86■■□□□ 1.09
SMC4-221ENST00000489573 TCAF1Q9Y4C2 921 aa21.86■■□□□ 1.09
SMC4-221ENST00000489573 COL4A3Q01955 1670 aa21.85■■□□□ 1.09
SMC4-221ENST00000489573 RGS16O15492 202 aaPredicted RBP21.85■■□□□ 1.09
SMC4-221ENST00000489573 CDH16O75309 829 aa21.85■■□□□ 1.09
SMC4-221ENST00000489573 ALDH1A2O94788 518 aa21.85■■□□□ 1.09
SMC4-221ENST00000489573 GSRP00390 522 aa21.85■■□□□ 1.09
SMC4-221ENST00000489573 ASLP04424 464 aa21.85■■□□□ 1.09
SMC4-221ENST00000489573 ADRA1DP25100 572 aa21.85■■□□□ 1.09
SMC4-221ENST00000489573 SLC6A11P48066 632 aa21.85■■□□□ 1.09
SMC4-221ENST00000489573 SNRPD1P62314 119 aaKnown RBP21.85■■□□□ 1.09
SMC4-221ENST00000489573 TRAF2Q12933 501 aa21.85■■□□□ 1.09
SMC4-221ENST00000489573 GALNT3Q14435 633 aa21.85■■□□□ 1.09
SMC4-221ENST00000489573 KBTBD12Q3ZCT8 623 aa21.85■■□□□ 1.09
SMC4-221ENST00000489573 ANKRD20A4Q4UJ75 823 aa21.85■■□□□ 1.09
SMC4-221ENST00000489573 DGKKQ5KSL6 1271 aa21.85■■□□□ 1.09
SMC4-221ENST00000489573 PKN3Q6P5Z2 889 aa21.85■■□□□ 1.09
SMC4-221ENST00000489573 CES3Q6UWW8 571 aa21.85■■□□□ 1.09
SMC4-221ENST00000489573 TDRPQ86YL5 185 aa21.85■■□□□ 1.09
SMC4-221ENST00000489573 RIBC1Q8N443 379 aaPredicted RBP21.85■■□□□ 1.09
SMC4-221ENST00000489573 PCDH20Q8N6Y1 951 aaKnown RBP21.85■■□□□ 1.09
SMC4-221ENST00000489573 OR2AP1Q8NGE2 309 aa21.85■■□□□ 1.09
SMC4-221ENST00000489573 RANBP9Q96S59 729 aa21.85■■□□□ 1.09
SMC4-221ENST00000489573 RPP25Q9BUL9 199 aaKnown RBP21.85■■□□□ 1.09
SMC4-221ENST00000489573 CIPCQ9C0C6 399 aa21.85■■□□□ 1.09
SMC4-221ENST00000489573 CHRAC1Q9NRG0 131 aa21.85■■□□□ 1.09
SMC4-221ENST00000489573 MOCS1Q9NZB8 636 aa21.85■■□□□ 1.09
SMC4-221ENST00000489573 BCCIPQ9P287 314 aaKnown RBP eCLIP21.85■■□□□ 1.09
SMC4-221ENST00000489573 CHKBQ9Y259 395 aa21.85■■□□□ 1.09
SMC4-221ENST00000489573 PCDHGC4Q9Y5F7 938 aa21.85■■□□□ 1.09
SMC4-221ENST00000489573 MIA3Q5JRA6 1907 aa21.84■■□□□ 1.09
SMC4-221ENST00000489573 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP21.84■■□□□ 1.09
SMC4-221ENST00000489573 HMGB1P1B2RPK0 211 aaPredicted RBP21.84■■□□□ 1.09
SMC4-221ENST00000489573 C1QAP02745 245 aa21.84■■□□□ 1.09
SMC4-221ENST00000489573 ATP5BP06576 529 aaKnown RBP21.84■■□□□ 1.09
SMC4-221ENST00000489573 GCAP28676 217 aa21.84■■□□□ 1.09
SMC4-221ENST00000489573 HTR4Q13639 388 aa21.84■■□□□ 1.09
SMC4-221ENST00000489573 SEPT6Q14141 434 aa21.84■■□□□ 1.09
SMC4-221ENST00000489573 FRG1Q14331 258 aaKnown RBP21.84■■□□□ 1.09
SMC4-221ENST00000489573 TRMT10BQ6PF06 316 aaKnown RBP21.84■■□□□ 1.09
SMC4-221ENST00000489573 Q7L0L9 218 aa21.84■■□□□ 1.09
SMC4-221ENST00000489573 SERBP1Q8NC51 408 aaKnown RBP eCLIP21.84■■□□□ 1.09
SMC4-221ENST00000489573 GTSE1Q9NYZ3 720 aa21.84■■□□□ 1.09
SMC4-221ENST00000489573 VPS18Q9P253 973 aa21.84■■□□□ 1.09
SMC4-221ENST00000489573 LGALS13Q9UHV8 139 aa21.84■■□□□ 1.09
SMC4-221ENST00000489573 EVLQ9UI08 416 aaPredicted RBP21.84■■□□□ 1.09
SMC4-221ENST00000489573 NUMBLQ9Y6R0 609 aa21.84■■□□□ 1.09
SMC4-221ENST00000489573 HEATR9A2RTY3 570 aa21.83■■□□□ 1.09
SMC4-221ENST00000489573 GRXCR2A6NFK2 248 aa21.83■■□□□ 1.09
SMC4-221ENST00000489573 FAM159BA6NKW6 160 aa21.83■■□□□ 1.09
SMC4-221ENST00000489573 ALADP13716 330 aa21.83■■□□□ 1.09
SMC4-221ENST00000489573 SP100P23497 879 aaPredicted RBP21.83■■□□□ 1.09
SMC4-221ENST00000489573 VASPP50552 380 aaPredicted RBP21.83■■□□□ 1.09
SMC4-221ENST00000489573 KDSRQ06136 332 aa21.83■■□□□ 1.09
SMC4-221ENST00000489573 MSLNQ13421 630 aaPredicted RBP21.83■■□□□ 1.09
SMC4-221ENST00000489573 SMAD4Q13485 552 aaKnown RBP21.83■■□□□ 1.09
SMC4-221ENST00000489573 DLG2Q15700 870 aa21.83■■□□□ 1.09
SMC4-221ENST00000489573 ACCSLQ4AC99 568 aa21.83■■□□□ 1.09
SMC4-221ENST00000489573 KCTD16Q68DU8 428 aa21.83■■□□□ 1.09
SMC4-221ENST00000489573 RYBPQ8N488 228 aaPredicted RBP21.83■■□□□ 1.09
SMC4-221ENST00000489573 OR6K2Q8NGY2 324 aa21.83■■□□□ 1.09
SMC4-221ENST00000489573 CYB5D2Q8WUJ1 264 aa21.83■■□□□ 1.09
SMC4-221ENST00000489573 MFSD3Q96ES6 412 aa21.83■■□□□ 1.09
SMC4-221ENST00000489573 MRGPRX3Q96LB0 322 aa21.83■■□□□ 1.09
SMC4-221ENST00000489573 FCRL3Q96P31 734 aaPredicted RBP21.83■■□□□ 1.09
SMC4-221ENST00000489573 PAFAH2Q99487 392 aa21.83■■□□□ 1.09
SMC4-221ENST00000489573 DHRS4Q9BTZ2 278 aa21.83■■□□□ 1.09
SMC4-221ENST00000489573 ADGRE3Q9BY15 652 aa21.83■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms