RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 GRXCR2A6NFK2 248 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 FAM159BA6NKW6 160 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 GOLGA8KD6RF30 607 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 RASGRF2O14827 1237 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 TRIM24O15164 1050 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 SOCS5O75159 536 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 CDH16O75309 829 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 NDST3O95803 873 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 IGSF6O95976 241 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 PRLP01236 227 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 POLBP06746 335 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 SRPRAP08240 638 aaKnown RBP11.6□□□□□ -0.55
C9orf3-220ENST00000489318 MYZAPP0CAP1 466 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 ALADP13716 330 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 CA4P22748 312 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 GJA4P35212 333 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 OPRD1P41143 372 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 CHRNA4P43681 627 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 STK19P49842 368 aaPredicted RBP11.6□□□□□ -0.55
C9orf3-220ENST00000489318 SCNN1BP51168 640 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 FAM193AP78312 1265 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 CRADDP78560 199 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 ECT2LQ008S8 904 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 TRAF2Q12933 501 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 NR1H3Q13133 447 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 PCSK7Q16549 785 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 PTPRNQ16849 979 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 KRT71Q3SY84 523 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 HSP90B2PQ58FF3 399 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 TTMPQ5BVD1 217 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 SIRPB2Q5JXA9 342 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 CERCAMQ5T4B2 595 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 AGBL2Q5U5Z8 902 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 GRAMD4Q6IC98 578 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 SRLQ86TD4 932 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 YAF2Q8IY57 180 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.6□□□□□ -0.55
C9orf3-220ENST00000489318 EPS8L3Q8TE67 593 aaKnown RBP11.6□□□□□ -0.55
C9orf3-220ENST00000489318 FBF1Q8TES7 1133 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 CFAP36Q96G28 342 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 TUBGCP5Q96RT8 1024 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 CYTH2Q99418 400 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 CCDC77Q9BR77 488 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 TRIM56Q9BRZ2 755 aaKnown RBP11.6□□□□□ -0.55
C9orf3-220ENST00000489318 UBE2ZQ9H832 354 aaPredicted RBP11.6□□□□□ -0.55
C9orf3-220ENST00000489318 PIH1D1Q9NWS0 290 aaKnown RBP11.6□□□□□ -0.55
C9orf3-220ENST00000489318 SAMD15Q9P1V8 674 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 SLC24A2Q9UI40 661 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 RIMKLBQ9ULI2 386 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 ERVW-1Q9UQF0 538 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 TCAF1Q9Y4C2 921 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 MAD1L1Q9Y6D9 718 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 NUMBLQ9Y6R0 609 aa11.6□□□□□ -0.55
C9orf3-220ENST00000489318 BRWD1Q9NSI6 2320 aa11.59□□□□□ -0.55
C9orf3-220ENST00000489318 HEATR9A2RTY3 570 aa11.59□□□□□ -0.55
C9orf3-220ENST00000489318 GOLGA6L10A6NI86 522 aa11.59□□□□□ -0.55
C9orf3-220ENST00000489318 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.59□□□□□ -0.55
C9orf3-220ENST00000489318 WASH3PC4AMC7 463 aa11.59□□□□□ -0.55
C9orf3-220ENST00000489318 TRAFD1O14545 582 aaPredicted RBP11.59□□□□□ -0.55
C9orf3-220ENST00000489318 MBTPS2O43462 519 aa11.59□□□□□ -0.55
C9orf3-220ENST00000489318 HTRA2O43464 458 aaPredicted RBP11.59□□□□□ -0.55
C9orf3-220ENST00000489318 PAPSS2O95340 614 aaPredicted RBP11.59□□□□□ -0.55
C9orf3-220ENST00000489318 DLDP09622 509 aaKnown RBP11.59□□□□□ -0.55
C9orf3-220ENST00000489318 POLR2EP19388 210 aaKnown RBP11.59□□□□□ -0.55
C9orf3-220ENST00000489318 ADRA1DP25100 572 aa11.59□□□□□ -0.55
C9orf3-220ENST00000489318 RPL26P61254 145 aaKnown RBP11.59□□□□□ -0.55
C9orf3-220ENST00000489318 SNRPD1P62314 119 aaKnown RBP11.59□□□□□ -0.55
C9orf3-220ENST00000489318 NAB1Q13506 487 aa11.59□□□□□ -0.55
C9orf3-220ENST00000489318 GRM2Q14416 872 aa11.59□□□□□ -0.55
C9orf3-220ENST00000489318 GRM3Q14832 879 aa11.59□□□□□ -0.55
C9orf3-220ENST00000489318 LONRF1Q17RB8 773 aa11.59□□□□□ -0.55
C9orf3-220ENST00000489318 DGKKQ5KSL6 1271 aa11.59□□□□□ -0.55
C9orf3-220ENST00000489318 PKN3Q6P5Z2 889 aa11.59□□□□□ -0.55
C9orf3-220ENST00000489318 CAPN12Q6ZSI9 719 aa11.59□□□□□ -0.55
C9orf3-220ENST00000489318 EP400NLQ6ZTU2 488 aa11.59□□□□□ -0.55
C9orf3-220ENST00000489318 KRT222Q8N1A0 295 aa11.59□□□□□ -0.55
C9orf3-220ENST00000489318 NAT16Q8N8M0 369 aa11.59□□□□□ -0.55
C9orf3-220ENST00000489318 TERB1Q8NA31 727 aa11.59□□□□□ -0.55
C9orf3-220ENST00000489318 PPHLN1Q8NEY8 458 aaKnown RBP11.59□□□□□ -0.55
C9orf3-220ENST00000489318 UHMK1Q8TAS1 419 aaKnown RBP11.59□□□□□ -0.55
C9orf3-220ENST00000489318 FRS2Q8WU20 508 aa11.59□□□□□ -0.55
C9orf3-220ENST00000489318 ARL8AQ96BM9 186 aa11.59□□□□□ -0.55
C9orf3-220ENST00000489318 TLCD1Q96CP7 247 aa11.59□□□□□ -0.55
C9orf3-220ENST00000489318 IFT43Q96FT9 208 aa11.59□□□□□ -0.55
C9orf3-220ENST00000489318 CERS2Q96G23 380 aa11.59□□□□□ -0.55
C9orf3-220ENST00000489318 ATP6V1G3Q96LB4 118 aa11.59□□□□□ -0.55
C9orf3-220ENST00000489318 TRMT61BQ9BVS5 477 aaKnown RBP11.59□□□□□ -0.55
C9orf3-220ENST00000489318 TRPV5Q9NQA5 729 aa11.59□□□□□ -0.55
C9orf3-220ENST00000489318 TREX1Q9NSU2 369 aa11.59□□□□□ -0.55
C9orf3-220ENST00000489318 OGFRQ9NZT2 677 aa11.59□□□□□ -0.55
C9orf3-220ENST00000489318 VPS18Q9P253 973 aa11.59□□□□□ -0.55
C9orf3-220ENST00000489318 DEC1Q9P2X7 70 aa11.59□□□□□ -0.55
C9orf3-220ENST00000489318 RPL26L1Q9UNX3 145 aaKnown RBP11.59□□□□□ -0.55
C9orf3-220ENST00000489318 RAI2Q9Y5P3 530 aa11.59□□□□□ -0.55
C9orf3-220ENST00000489318 RPS6KL1Q9Y6S9 549 aa11.59□□□□□ -0.55
C9orf3-220ENST00000489318 FAM169AQ9Y6X4 670 aa11.59□□□□□ -0.55
C9orf3-220ENST00000489318 MROH6A6NGR9 719 aa11.58□□□□□ -0.56
C9orf3-220ENST00000489318 HMGB1P1B2RPK0 211 aaPredicted RBP11.58□□□□□ -0.56
C9orf3-220ENST00000489318 H3BQ06 376 aaPredicted RBP11.58□□□□□ -0.56
C9orf3-220ENST00000489318 RNF40O75150 1001 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms