RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 TIMP2P16035 220 aa22.87■■□□□ 1.25
PTPN4-211ENST00000488279 XPAP23025 273 aaPredicted RBP22.87■■□□□ 1.25
PTPN4-211ENST00000488279 ZNF165P49910 485 aa22.87■■□□□ 1.25
PTPN4-211ENST00000488279 DUSP3P51452 185 aaPredicted RBP22.87■■□□□ 1.25
PTPN4-211ENST00000488279 SUOXP51687 545 aa22.87■■□□□ 1.25
PTPN4-211ENST00000488279 PFN3P60673 137 aa22.87■■□□□ 1.25
PTPN4-211ENST00000488279 PTK2BQ14289 1009 aa22.87■■□□□ 1.25
PTPN4-211ENST00000488279 GRM3Q14832 879 aa22.87■■□□□ 1.25
PTPN4-211ENST00000488279 LRRC73Q5JTD7 316 aa22.87■■□□□ 1.25
PTPN4-211ENST00000488279 ERMARDQ5T6L9 678 aa22.87■■□□□ 1.25
PTPN4-211ENST00000488279 FAM181AQ8N9Y4 354 aa22.87■■□□□ 1.25
PTPN4-211ENST00000488279 HCAR2Q8TDS4 363 aa22.87■■□□□ 1.25
PTPN4-211ENST00000488279 APOLD1Q96LR9 279 aa22.87■■□□□ 1.25
PTPN4-211ENST00000488279 NCAPGQ9BPX3 1015 aa22.87■■□□□ 1.25
PTPN4-211ENST00000488279 DHX35Q9H5Z1 703 aaKnown RBP22.87■■□□□ 1.25
PTPN4-211ENST00000488279 LRRC19Q9H756 370 aa22.87■■□□□ 1.25
PTPN4-211ENST00000488279 USP29Q9HBJ7 922 aa22.87■■□□□ 1.25
PTPN4-211ENST00000488279 EVA1BQ9NVM1 165 aa22.87■■□□□ 1.25
PTPN4-211ENST00000488279 GPATCH2LQ9NWQ4 482 aa22.87■■□□□ 1.25
PTPN4-211ENST00000488279 PCSK1NQ9UHG2 260 aa22.87■■□□□ 1.25
PTPN4-211ENST00000488279 CSNK1G3Q9Y6M4 447 aa22.87■■□□□ 1.25
PTPN4-211ENST00000488279 A0A1W2PQC6 194 aa22.86■■□□□ 1.25
PTPN4-211ENST00000488279 TMEM191CA6NGB0 347 aa22.86■■□□□ 1.25
PTPN4-211ENST00000488279 EEF2KO00418 725 aaKnown RBP22.86■■□□□ 1.25
PTPN4-211ENST00000488279 INSIG1O15503 277 aa22.86■■□□□ 1.25
PTPN4-211ENST00000488279 DAPK3O43293 454 aa22.86■■□□□ 1.25
PTPN4-211ENST00000488279 ATMINO43313 823 aaPredicted RBP22.86■■□□□ 1.25
PTPN4-211ENST00000488279 NEBLO76041 1014 aa22.86■■□□□ 1.25
PTPN4-211ENST00000488279 RNF8O76064 485 aa22.86■■□□□ 1.25
PTPN4-211ENST00000488279 JUNDP17535 347 aa22.86■■□□□ 1.25
PTPN4-211ENST00000488279 RTP5Q14D33 572 aa22.86■■□□□ 1.25
PTPN4-211ENST00000488279 ZNF571Q7Z3V5 609 aaPredicted RBP22.86■■□□□ 1.25
PTPN4-211ENST00000488279 VPS36Q86VN1 386 aa22.86■■□□□ 1.25
PTPN4-211ENST00000488279 DNAAF5Q86Y56 855 aa22.86■■□□□ 1.25
PTPN4-211ENST00000488279 DCBLD1Q8N8Z6 715 aa22.86■■□□□ 1.25
PTPN4-211ENST00000488279 ZNF548Q8NEK5 533 aaPredicted RBP22.86■■□□□ 1.25
PTPN4-211ENST00000488279 EXOC2Q96KP1 924 aa22.86■■□□□ 1.25
PTPN4-211ENST00000488279 LHX3Q9UBR4 397 aa22.86■■□□□ 1.25
PTPN4-211ENST00000488279 URB1O60287 2271 aaKnown RBP22.85■■□□□ 1.25
PTPN4-211ENST00000488279 LOC400499M0QZD8 3231 aa22.85■■□□□ 1.25
PTPN4-211ENST00000488279 A0A087WV48 116 aa22.85■■□□□ 1.25
PTPN4-211ENST00000488279 ARHGAP42A6NI28 874 aa22.85■■□□□ 1.25
PTPN4-211ENST00000488279 J3KR12 359 aa22.85■■□□□ 1.25
PTPN4-211ENST00000488279 PRAMEF11O60813 436 aa22.85■■□□□ 1.25
PTPN4-211ENST00000488279 ITIH2P19823 946 aa22.85■■□□□ 1.25
PTPN4-211ENST00000488279 PAPOLAP51003 745 aaKnown RBP22.85■■□□□ 1.25
PTPN4-211ENST00000488279 THOP1P52888 689 aa22.85■■□□□ 1.25
PTPN4-211ENST00000488279 YPEL5P62699 121 aa22.85■■□□□ 1.25
PTPN4-211ENST00000488279 SEMG2Q02383 582 aa22.85■■□□□ 1.25
PTPN4-211ENST00000488279 KLHL30Q0D2K2 578 aa22.85■■□□□ 1.25
PTPN4-211ENST00000488279 CAVIN1Q6NZI2 390 aaKnown RBP22.85■■□□□ 1.25
PTPN4-211ENST00000488279 ARFGAP1Q8N6T3 406 aa22.85■■□□□ 1.25
PTPN4-211ENST00000488279 FNIP1Q8TF40 1166 aa22.85■■□□□ 1.25
PTPN4-211ENST00000488279 BTN2A2Q8WVV5 523 aa22.85■■□□□ 1.25
PTPN4-211ENST00000488279 CELF6Q96J87 481 aaKnown RBP22.85■■□□□ 1.25
PTPN4-211ENST00000488279 NAP1L5Q96NT1 182 aaPredicted RBP22.85■■□□□ 1.25
PTPN4-211ENST00000488279 SLC39A8Q9C0K1 460 aa22.85■■□□□ 1.25
PTPN4-211ENST00000488279 SUV39H2Q9H5I1 410 aa22.85■■□□□ 1.25
PTPN4-211ENST00000488279 PDFQ9HBH1 243 aa22.85■■□□□ 1.25
PTPN4-211ENST00000488279 KLF15Q9UIH9 416 aa22.85■■□□□ 1.25
PTPN4-211ENST00000488279 A0A1B0GTH6 734 aa22.84■■□□□ 1.25
PTPN4-211ENST00000488279 TOR1BO14657 336 aa22.84■■□□□ 1.25
PTPN4-211ENST00000488279 AQP9O43315 295 aa22.84■■□□□ 1.25
PTPN4-211ENST00000488279 PRPSAP2O60256 369 aa22.84■■□□□ 1.25
PTPN4-211ENST00000488279 MT-CO3P00414 261 aa22.84■■□□□ 1.25
PTPN4-211ENST00000488279 GP1BAP07359 652 aa22.84■■□□□ 1.25
PTPN4-211ENST00000488279 MYF5P13349 255 aa22.84■■□□□ 1.25
PTPN4-211ENST00000488279 PRKCIP41743 596 aa22.84■■□□□ 1.25
PTPN4-211ENST00000488279 ELP6Q0PNE2 266 aa22.84■■□□□ 1.25
PTPN4-211ENST00000488279 CA9Q16790 459 aa22.84■■□□□ 1.25
PTPN4-211ENST00000488279 KLHL40Q2TBA0 621 aa22.84■■□□□ 1.25
PTPN4-211ENST00000488279 TPRG1LQ5T0D9 272 aa22.84■■□□□ 1.25
PTPN4-211ENST00000488279 ZCCHC8Q6NZY4 707 aaKnown RBP22.84■■□□□ 1.25
PTPN4-211ENST00000488279 PDZD3Q86UT5 571 aa22.84■■□□□ 1.25
PTPN4-211ENST00000488279 ZNF641Q96N77 438 aaPredicted RBP22.84■■□□□ 1.25
PTPN4-211ENST00000488279 WRAP53Q9BUR4 548 aaKnown RBP22.84■■□□□ 1.25
PTPN4-211ENST00000488279 EDEM3Q9BZQ6 932 aa22.84■■□□□ 1.25
PTPN4-211ENST00000488279 ABCG4Q9H172 646 aa22.84■■□□□ 1.25
PTPN4-211ENST00000488279 NCKIPSDQ9NZQ3 722 aa22.84■■□□□ 1.25
PTPN4-211ENST00000488279 CNOT8Q9UFF9 292 aaKnown RBP22.84■■□□□ 1.25
PTPN4-211ENST00000488279 DDX3XO00571 662 aaKnown RBP eCLIP22.83■■□□□ 1.255e-7■□□□□ 9
PTPN4-211ENST00000488279 OPA1O60313 960 aa22.83■■□□□ 1.25
PTPN4-211ENST00000488279 PALMO75781 387 aa22.83■■□□□ 1.25
PTPN4-211ENST00000488279 PIGNO95427 931 aa22.83■■□□□ 1.25
PTPN4-211ENST00000488279 SERPINC1P01008 464 aa22.83■■□□□ 1.25
PTPN4-211ENST00000488279 MIPP30301 263 aa22.83■■□□□ 1.25
PTPN4-211ENST00000488279 EIF2B5Q13144 721 aaKnown RBP22.83■■□□□ 1.25
PTPN4-211ENST00000488279 NR1I3Q14994 352 aa22.83■■□□□ 1.25
PTPN4-211ENST00000488279 UGP2Q16851 508 aa22.83■■□□□ 1.25
PTPN4-211ENST00000488279 TMEM52BQ4KMG9 183 aa22.83■■□□□ 1.25
PTPN4-211ENST00000488279 CFAP58Q5T655 872 aa22.83■■□□□ 1.25
PTPN4-211ENST00000488279 KDM7AQ6ZMT4 941 aa22.83■■□□□ 1.25
PTPN4-211ENST00000488279 RFX8Q6ZV50 586 aa22.83■■□□□ 1.25
PTPN4-211ENST00000488279 PSTKQ8IV42 348 aaKnown RBP22.83■■□□□ 1.25
PTPN4-211ENST00000488279 LMX1AQ8TE12 382 aa22.83■■□□□ 1.25
PTPN4-211ENST00000488279 DCBLD2Q96PD2 775 aa22.83■■□□□ 1.25
PTPN4-211ENST00000488279 PEBP4Q96S96 227 aa22.83■■□□□ 1.25
PTPN4-211ENST00000488279 SNRNP25Q9BV90 132 aaKnown RBP22.83■■□□□ 1.25
PTPN4-211ENST00000488279 SPASTQ9UBP0 616 aa22.83■■□□□ 1.25
PTPN4-211ENST00000488279 SCINQ9Y6U3 715 aa22.83■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms