RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 HAUS2Q9NVX0 235 aa16.07■□□□□ 0.16
UPF3A-208ENST00000484246 EIF2B4Q9UI10 523 aaKnown RBP16.07■□□□□ 0.16
UPF3A-208ENST00000484246 ABCA7Q8IZY2 2146 aa16.06■□□□□ 0.16
UPF3A-208ENST00000484246 A0A1W2PQ67 120 aa16.06■□□□□ 0.16
UPF3A-208ENST00000484246 FAM47DPA6NHR8 397 aa16.06■□□□□ 0.16
UPF3A-208ENST00000484246 PATE3B3GLJ2 98 aa16.06■□□□□ 0.16
UPF3A-208ENST00000484246 TRAFD1O14545 582 aaPredicted RBP16.06■□□□□ 0.16
UPF3A-208ENST00000484246 PPP1R12AO14974 1030 aaPredicted RBP16.06■□□□□ 0.16
UPF3A-208ENST00000484246 HTRA2O43464 458 aaPredicted RBP16.06■□□□□ 0.16
UPF3A-208ENST00000484246 TSPAN6O43657 245 aa16.06■□□□□ 0.16
UPF3A-208ENST00000484246 CST8O60676 142 aa16.06■□□□□ 0.16
UPF3A-208ENST00000484246 MAOBP27338 520 aa16.06■□□□□ 0.16
UPF3A-208ENST00000484246 AFF3P51826 1226 aaKnown RBP16.06■□□□□ 0.16
UPF3A-208ENST00000484246 RWDD2BP57060 319 aa16.06■□□□□ 0.16
UPF3A-208ENST00000484246 RACK1P63244 317 aaKnown RBP16.06■□□□□ 0.16
UPF3A-208ENST00000484246 TCEAL6Q6IPX3 200 aa16.06■□□□□ 0.16
UPF3A-208ENST00000484246 FBXL19Q6PCT2 694 aa16.06■□□□□ 0.16
UPF3A-208ENST00000484246 PEX26Q7Z412 305 aa16.06■□□□□ 0.16
UPF3A-208ENST00000484246 HORMAD1Q86X24 394 aa16.06■□□□□ 0.16
UPF3A-208ENST00000484246 CCDC13Q8IYE1 715 aa16.06■□□□□ 0.16
UPF3A-208ENST00000484246 ZCCHC9Q8N567 271 aaKnown RBP16.06■□□□□ 0.16
UPF3A-208ENST00000484246 NETO1Q8TDF5 533 aa16.06■□□□□ 0.16
UPF3A-208ENST00000484246 ALG3Q92685 438 aa16.06■□□□□ 0.16
UPF3A-208ENST00000484246 TCEAL3Q969E4 200 aa16.06■□□□□ 0.16
UPF3A-208ENST00000484246 NUSAP1Q9BXS6 441 aaKnown RBP16.06■□□□□ 0.16
UPF3A-208ENST00000484246 ZDHHC5Q9C0B5 715 aa16.06■□□□□ 0.16
UPF3A-208ENST00000484246 SMOC1Q9H4F8 434 aa16.06■□□□□ 0.16
UPF3A-208ENST00000484246 TM9SF3Q9HD45 589 aa16.06■□□□□ 0.16
UPF3A-208ENST00000484246 AMFRQ9UKV5 643 aa16.06■□□□□ 0.16
UPF3A-208ENST00000484246 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.06■□□□□ 0.16
UPF3A-208ENST00000484246 ZNF292O60281 2723 aa16.05■□□□□ 0.16
UPF3A-208ENST00000484246 TBC1D3DA0A087WVF3 549 aa16.05■□□□□ 0.16
UPF3A-208ENST00000484246 TBC1D3IA0A087WXS9 549 aa16.05■□□□□ 0.16
UPF3A-208ENST00000484246 TBC1D3EA0A087X179 549 aa16.05■□□□□ 0.16
UPF3A-208ENST00000484246 TBC1D3KA0A087X1G2 549 aa16.05■□□□□ 0.16
UPF3A-208ENST00000484246 TBC1D3FA6NER0 549 aaPredicted RBP16.05■□□□□ 0.16
UPF3A-208ENST00000484246 TBC1D3LB9A6J9 549 aa16.05■□□□□ 0.16
UPF3A-208ENST00000484246 RNGTTO60942 597 aaKnown RBP16.05■□□□□ 0.16
UPF3A-208ENST00000484246 MAP3K6O95382 1288 aa16.05■□□□□ 0.16
UPF3A-208ENST00000484246 PIGNO95427 931 aa16.05■□□□□ 0.16
UPF3A-208ENST00000484246 TBC1D3HP0C7X1 549 aa16.05■□□□□ 0.16
UPF3A-208ENST00000484246 KRT10P13645 584 aa16.05■□□□□ 0.16
UPF3A-208ENST00000484246 CCNB1P14635 433 aa16.05■□□□□ 0.16
UPF3A-208ENST00000484246 SDHBP21912 280 aa16.05■□□□□ 0.16
UPF3A-208ENST00000484246 CES1P23141 567 aa16.05■□□□□ 0.16
UPF3A-208ENST00000484246 IRX4P78413 519 aa16.05■□□□□ 0.16
UPF3A-208ENST00000484246 PRKD1Q15139 912 aaPredicted RBP16.05■□□□□ 0.16
UPF3A-208ENST00000484246 ZNF284Q2VY69 593 aa16.05■□□□□ 0.16
UPF3A-208ENST00000484246 SETMARQ53H47 684 aaPredicted RBP16.05■□□□□ 0.16
UPF3A-208ENST00000484246 TBC1D3GQ6DHY5 549 aa16.05■□□□□ 0.16
UPF3A-208ENST00000484246 TBC1D3CQ6IPX1 549 aa16.05■□□□□ 0.16
UPF3A-208ENST00000484246 NAPEPLDQ6IQ20 393 aa16.05■□□□□ 0.16
UPF3A-208ENST00000484246 PRPF39Q86UA1 669 aaKnown RBP16.05■□□□□ 0.16
UPF3A-208ENST00000484246 TBC1D3Q8IZP1 549 aaPredicted RBP16.05■□□□□ 0.16
UPF3A-208ENST00000484246 ASB12Q8WXK4 309 aa16.05■□□□□ 0.16
UPF3A-208ENST00000484246 SNX19Q92543 992 aa16.05■□□□□ 0.16
UPF3A-208ENST00000484246 HES6Q96HZ4 224 aa16.05■□□□□ 0.16
UPF3A-208ENST00000484246 NSMCE3Q96MG7 304 aa16.05■□□□□ 0.16
UPF3A-208ENST00000484246 IL12RB2Q99665 862 aa16.05■□□□□ 0.16
UPF3A-208ENST00000484246 EDEM2Q9BV94 578 aa16.05■□□□□ 0.16
UPF3A-208ENST00000484246 POLR1EQ9GZS1 481 aaKnown RBP16.05■□□□□ 0.16
UPF3A-208ENST00000484246 EBF2Q9HAK2 575 aa16.05■□□□□ 0.16
UPF3A-208ENST00000484246 HEY1Q9Y5J3 304 aa16.05■□□□□ 0.16
UPF3A-208ENST00000484246 SLCO1B1Q9Y6L6 691 aa16.05■□□□□ 0.16
UPF3A-208ENST00000484246 A0A1W2PQU0 124 aa16.04■□□□□ 0.16
UPF3A-208ENST00000484246 UPK3BL1B0FP48 263 aa16.04■□□□□ 0.16
UPF3A-208ENST00000484246 UPK3BL2E5RIL1 263 aa16.04■□□□□ 0.16
UPF3A-208ENST00000484246 APOC4-APOC2K7ER74 178 aa16.04■□□□□ 0.16
UPF3A-208ENST00000484246 DDX3YO15523 660 aaKnown RBP16.04■□□□□ 0.16
UPF3A-208ENST00000484246 APOC2P02655 101 aa16.04■□□□□ 0.16
UPF3A-208ENST00000484246 CFIP05156 583 aa16.04■□□□□ 0.16
UPF3A-208ENST00000484246 TIMP2P16035 220 aa16.04■□□□□ 0.16
UPF3A-208ENST00000484246 PECAM1P16284 738 aaPredicted RBP16.04■□□□□ 0.16
UPF3A-208ENST00000484246 SCNN1BP51168 640 aa16.04■□□□□ 0.16
UPF3A-208ENST00000484246 RPS21P63220 83 aaKnown RBP16.04■□□□□ 0.16
UPF3A-208ENST00000484246 BCL2L1Q07817 233 aa16.04■□□□□ 0.16
UPF3A-208ENST00000484246 ADCY2Q08462 1091 aa16.04■□□□□ 0.16
UPF3A-208ENST00000484246 GSE1Q14687 1217 aa16.04■□□□□ 0.16
UPF3A-208ENST00000484246 UGP2Q16851 508 aa16.04■□□□□ 0.16
UPF3A-208ENST00000484246 AASDHQ4L235 1098 aaPredicted RBP16.04■□□□□ 0.16
UPF3A-208ENST00000484246 NPNTQ6UXI9 565 aa16.04■□□□□ 0.16
UPF3A-208ENST00000484246 CAMK1DQ8IU85 385 aa16.04■□□□□ 0.16
UPF3A-208ENST00000484246 CCDC50Q8IVM0 306 aa16.04■□□□□ 0.16
UPF3A-208ENST00000484246 UBL4BQ8N7F7 174 aa16.04■□□□□ 0.16
UPF3A-208ENST00000484246 TMEM145Q8NBT3 493 aa16.04■□□□□ 0.16
UPF3A-208ENST00000484246 LGMNQ99538 433 aa16.04■□□□□ 0.16
UPF3A-208ENST00000484246 OSBPL8Q9BZF1 889 aa16.04■□□□□ 0.16
UPF3A-208ENST00000484246 MIR1-1HGQ9H1L0 117 aa16.04■□□□□ 0.16
UPF3A-208ENST00000484246 NOD2Q9HC29 1040 aa16.04■□□□□ 0.16
UPF3A-208ENST00000484246 RXFP3Q9NSD7 469 aa16.04■□□□□ 0.16
UPF3A-208ENST00000484246 ZFR2Q9UPR6 939 aaKnown RBP16.04■□□□□ 0.16
UPF3A-208ENST00000484246 ATP8A1Q9Y2Q0 1164 aa16.04■□□□□ 0.16
UPF3A-208ENST00000484246 PTPRZ1P23471 2315 aaPredicted RBP16.03■□□□□ 0.16
UPF3A-208ENST00000484246 A0A1W2PR77 199 aa16.03■□□□□ 0.16
UPF3A-208ENST00000484246 CFAP69A5D8W1 941 aa16.03■□□□□ 0.16
UPF3A-208ENST00000484246 ARHGAP33O14559 1287 aa16.03■□□□□ 0.16
UPF3A-208ENST00000484246 VILLO15195 856 aa16.03■□□□□ 0.16
UPF3A-208ENST00000484246 MTSS1O43312 755 aa16.03■□□□□ 0.16
UPF3A-208ENST00000484246 GJB3O75712 270 aa16.03■□□□□ 0.16
UPF3A-208ENST00000484246 FTCDO95954 541 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms