RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 TMPRSS4Q9NRS4 437 aa17.42■□□□□ 0.38
VIM-204ENST00000478746 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.42■□□□□ 0.38
VIM-204ENST00000478746 SCN8AQ9UQD0 1980 aa17.42■□□□□ 0.38
VIM-204ENST00000478746 KRIT1O00522 736 aa17.41■□□□□ 0.38
VIM-204ENST00000478746 GP1BBP13224 206 aa17.41■□□□□ 0.38
VIM-204ENST00000478746 WT1P19544 449 aaPredicted RBP17.41■□□□□ 0.38
VIM-204ENST00000478746 SULT1E1P49888 294 aa17.41■□□□□ 0.38
VIM-204ENST00000478746 GNA12Q03113 381 aa17.41■□□□□ 0.38
VIM-204ENST00000478746 MORC3Q14149 939 aa17.41■□□□□ 0.38
VIM-204ENST00000478746 CLCA4Q14CN2 919 aa17.41■□□□□ 0.38
VIM-204ENST00000478746 TCEA2Q15560 299 aa17.41■□□□□ 0.38
VIM-204ENST00000478746 ISM2Q6H9L7 571 aa17.41■□□□□ 0.38
VIM-204ENST00000478746 RD3Q7Z3Z2 195 aa17.41■□□□□ 0.38
VIM-204ENST00000478746 TRIM59Q8IWR1 403 aa17.41■□□□□ 0.38
VIM-204ENST00000478746 Q8N9G6 341 aaPredicted RBP17.41■□□□□ 0.38
VIM-204ENST00000478746 SPATA20Q8TB22 786 aa17.41■□□□□ 0.38
VIM-204ENST00000478746 USP7Q93009 1102 aa17.41■□□□□ 0.38
VIM-204ENST00000478746 TSACCQ96A04 125 aaPredicted RBP17.41■□□□□ 0.38
VIM-204ENST00000478746 STAP1Q9ULZ2 295 aa17.41■□□□□ 0.38
VIM-204ENST00000478746 PCDHGC3Q9UN70 934 aa17.41■□□□□ 0.38
VIM-204ENST00000478746 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.41■□□□□ 0.38
VIM-204ENST00000478746 DOCK4Q8N1I0 1966 aa17.4■□□□□ 0.38
VIM-204ENST00000478746 A0A1W2PQC6 194 aa17.4■□□□□ 0.38
VIM-204ENST00000478746 TMEM110-MUSTN1A8MSY1 372 aa17.4■□□□□ 0.38
VIM-204ENST00000478746 BECN2A8MW95 431 aa17.4■□□□□ 0.38
VIM-204ENST00000478746 AREL1O15033 823 aa17.4■□□□□ 0.38
VIM-204ENST00000478746 RASGRP1O95267 797 aa17.4■□□□□ 0.38
VIM-204ENST00000478746 POP4O95707 220 aaKnown RBP17.4■□□□□ 0.38
VIM-204ENST00000478746 CD160O95971 181 aa17.4■□□□□ 0.38
VIM-204ENST00000478746 UGT2B4P06133 528 aa17.4■□□□□ 0.38
VIM-204ENST00000478746 ETV5P41161 510 aa17.4■□□□□ 0.38
VIM-204ENST00000478746 PEX5P50542 639 aa17.4■□□□□ 0.38
VIM-204ENST00000478746 MAPK10P53779 464 aa17.4■□□□□ 0.38
VIM-204ENST00000478746 ZFP36L1Q07352 338 aaKnown RBP17.4■□□□□ 0.38
VIM-204ENST00000478746 POLD3Q15054 466 aaPredicted RBP17.4■□□□□ 0.38
VIM-204ENST00000478746 ARHGAP44Q17R89 818 aa17.4■□□□□ 0.38
VIM-204ENST00000478746 GJB7Q6PEY0 223 aa17.4■□□□□ 0.38
VIM-204ENST00000478746 DTX1Q86Y01 620 aa17.4■□□□□ 0.38
VIM-204ENST00000478746 PTRH1Q86Y79 214 aaKnown RBP17.4■□□□□ 0.38
VIM-204ENST00000478746 CCNJLQ8IV13 435 aa17.4■□□□□ 0.38
VIM-204ENST00000478746 DRC7Q8IY82 874 aa17.4■□□□□ 0.38
VIM-204ENST00000478746 FMR1NBQ8N0W7 255 aaPredicted RBP17.4■□□□□ 0.38
VIM-204ENST00000478746 TP53I13Q8NBR0 393 aaPredicted RBP17.4■□□□□ 0.38
VIM-204ENST00000478746 C1orf131Q8NDD1 294 aaKnown RBP17.4■□□□□ 0.38
VIM-204ENST00000478746 CXorf40AQ8TE69 158 aa17.4■□□□□ 0.38
VIM-204ENST00000478746 HTR3CQ8WXA8 447 aa17.4■□□□□ 0.38
VIM-204ENST00000478746 NT5C3BQ969T7 300 aa17.4■□□□□ 0.38
VIM-204ENST00000478746 PGAP3Q96FM1 320 aaPredicted RBP17.4■□□□□ 0.38
VIM-204ENST00000478746 FAM81BQ96LP2 452 aa17.4■□□□□ 0.38
VIM-204ENST00000478746 KLHL32Q96NJ5 620 aa17.4■□□□□ 0.38
VIM-204ENST00000478746 CMKLR1Q99788 373 aa17.4■□□□□ 0.38
VIM-204ENST00000478746 EPAS1Q99814 870 aa17.4■□□□□ 0.38
VIM-204ENST00000478746 ADNPQ9H2P0 1102 aa17.4■□□□□ 0.38
VIM-204ENST00000478746 TMEM51Q9NW97 253 aa17.4■□□□□ 0.38
VIM-204ENST00000478746 ZNF212Q9UDV6 495 aa17.4■□□□□ 0.38
VIM-204ENST00000478746 ZDHHC9Q9Y397 364 aa17.4■□□□□ 0.38
VIM-204ENST00000478746 TEX15Q9BXT5 2789 aa17.4■□□□□ 0.38
VIM-204ENST00000478746 GNA14O95837 355 aa17.39■□□□□ 0.37
VIM-204ENST00000478746 CD44P16070 742 aaKnown RBP17.39■□□□□ 0.37
VIM-204ENST00000478746 KRT9P35527 623 aa17.39■□□□□ 0.37
VIM-204ENST00000478746 PPP1R2P41236 205 aa17.39■□□□□ 0.37
VIM-204ENST00000478746 SNRPD1P62314 119 aaKnown RBP17.39■□□□□ 0.37
VIM-204ENST00000478746 ALG11Q2TAA5 492 aa17.39■□□□□ 0.37
VIM-204ENST00000478746 KLHL40Q2TBA0 621 aa17.39■□□□□ 0.37
VIM-204ENST00000478746 MYLK3Q32MK0 819 aa17.39■□□□□ 0.37
VIM-204ENST00000478746 PTPN20Q4JDL3 420 aa17.39■□□□□ 0.37
VIM-204ENST00000478746 ARTNQ5T4W7 220 aa17.39■□□□□ 0.37
VIM-204ENST00000478746 KLHL10Q6JEL2 608 aa17.39■□□□□ 0.37
VIM-204ENST00000478746 TTI2Q6NXR4 508 aa17.39■□□□□ 0.37
VIM-204ENST00000478746 ENPP7Q6UWV6 458 aa17.39■□□□□ 0.37
VIM-204ENST00000478746 ZDHHC17Q8IUH5 632 aa17.39■□□□□ 0.37
VIM-204ENST00000478746 HAPLN3Q96S86 360 aa17.39■□□□□ 0.37
VIM-204ENST00000478746 TBCBQ99426 244 aa17.39■□□□□ 0.37
VIM-204ENST00000478746 FUCA2Q9BTY2 467 aa17.39■□□□□ 0.37
VIM-204ENST00000478746 OSBPL1AQ9BXW6 950 aa17.39■□□□□ 0.37
VIM-204ENST00000478746 ZYG11BQ9C0D3 744 aa17.39■□□□□ 0.37
VIM-204ENST00000478746 FOXJ2Q9P0K8 574 aa17.39■□□□□ 0.37
VIM-204ENST00000478746 LRRK2Q5S007 2527 aa17.39■□□□□ 0.37
VIM-204ENST00000478746 CXorf51AA0A1B0GTR3 108 aa17.38■□□□□ 0.37
VIM-204ENST00000478746 C9orf172C9J069 976 aa17.38■□□□□ 0.37
VIM-204ENST00000478746 GSRP00390 522 aa17.38■□□□□ 0.37
VIM-204ENST00000478746 CD82P27701 267 aa17.38■□□□□ 0.37
VIM-204ENST00000478746 HTR1BP28222 390 aa17.38■□□□□ 0.37
VIM-204ENST00000478746 ACVRL1P37023 503 aa17.38■□□□□ 0.37
VIM-204ENST00000478746 PTK2Q05397 1052 aa17.38■□□□□ 0.37
VIM-204ENST00000478746 SLC25A52Q3SY17 297 aa17.38■□□□□ 0.37
VIM-204ENST00000478746 LRRC73Q5JTD7 316 aa17.38■□□□□ 0.37
VIM-204ENST00000478746 TMEM164Q5U3C3 297 aa17.38■□□□□ 0.37
VIM-204ENST00000478746 GDPD4Q6W3E5 623 aa17.38■□□□□ 0.37
VIM-204ENST00000478746 OR2AP1Q8NGE2 309 aa17.38■□□□□ 0.37
VIM-204ENST00000478746 ZNF564Q8TBZ8 553 aaPredicted RBP17.38■□□□□ 0.37
VIM-204ENST00000478746 CRACR2AQ9BSW2 395 aa17.38■□□□□ 0.37
VIM-204ENST00000478746 GDPD2Q9HCC8 539 aa17.38■□□□□ 0.37
VIM-204ENST00000478746 APPL1Q9UKG1 709 aa17.38■□□□□ 0.37
VIM-204ENST00000478746 ATP6V1DQ9Y5K8 247 aa17.38■□□□□ 0.37
VIM-204ENST00000478746 RNF215Q9Y6U7 377 aa17.38■□□□□ 0.37
VIM-204ENST00000478746 GLB1P16278 677 aa17.37■□□□□ 0.37
VIM-204ENST00000478746 ITIH2P19823 946 aa17.37■□□□□ 0.37
VIM-204ENST00000478746 ETFBP38117 255 aa17.37■□□□□ 0.37
VIM-204ENST00000478746 GEMIN4P57678 1058 aaKnown RBP17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms