RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 NEMP1O14524 444 aa15.76■□□□□ 0.11
HMGA1-206ENST00000478214 AREL1O15033 823 aa15.76■□□□□ 0.11
HMGA1-206ENST00000478214 IPO7O95373 1038 aaKnown RBP15.76■□□□□ 0.11
HMGA1-206ENST00000478214 CER1O95813 267 aa15.76■□□□□ 0.11
HMGA1-206ENST00000478214 CD59P13987 128 aa15.76■□□□□ 0.11
HMGA1-206ENST00000478214 ITIH2P19823 946 aa15.76■□□□□ 0.11
HMGA1-206ENST00000478214 SCNN1BP51168 640 aa15.76■□□□□ 0.11
HMGA1-206ENST00000478214 GBE1Q04446 702 aa15.76■□□□□ 0.11
HMGA1-206ENST00000478214 NSUN2Q08J23 767 aaKnown RBP eCLIP15.76■□□□□ 0.11
HMGA1-206ENST00000478214 GALNT2Q10471 571 aa15.76■□□□□ 0.11
HMGA1-206ENST00000478214 ZNF235Q14590 738 aa15.76■□□□□ 0.11
HMGA1-206ENST00000478214 RNF25Q96BH1 459 aaPredicted RBP15.76■□□□□ 0.11
HMGA1-206ENST00000478214 FEM1CQ96JP0 617 aa15.76■□□□□ 0.11
HMGA1-206ENST00000478214 NSMCE3Q96MG7 304 aa15.76■□□□□ 0.11
HMGA1-206ENST00000478214 TUBGCP5Q96RT8 1024 aa15.76■□□□□ 0.11
HMGA1-206ENST00000478214 FZD3Q9NPG1 666 aa15.76■□□□□ 0.11
HMGA1-206ENST00000478214 DUSP10Q9Y6W6 482 aa15.76■□□□□ 0.11
HMGA1-206ENST00000478214 NCOR2Q9Y618 2525 aa15.75■□□□□ 0.11
HMGA1-206ENST00000478214 TSPAN11A1L157 253 aa15.75■□□□□ 0.11
HMGA1-206ENST00000478214 IGLON5A6NGN9 336 aa15.75■□□□□ 0.11
HMGA1-206ENST00000478214 H0Y8X5 98 aa15.75■□□□□ 0.11
HMGA1-206ENST00000478214 GIPC1O14908 333 aa15.75■□□□□ 0.11
HMGA1-206ENST00000478214 TSPAN6O43657 245 aa15.75■□□□□ 0.11
HMGA1-206ENST00000478214 KCNK5O95279 499 aa15.75■□□□□ 0.11
HMGA1-206ENST00000478214 GARSP41250 739 aaKnown RBP15.75■□□□□ 0.11
HMGA1-206ENST00000478214 RENBPP51606 427 aa15.75■□□□□ 0.11
HMGA1-206ENST00000478214 RPS21P63220 83 aaKnown RBP15.75■□□□□ 0.11
HMGA1-206ENST00000478214 SLC10A2Q12908 348 aaPredicted RBP15.75■□□□□ 0.11
HMGA1-206ENST00000478214 FGL2Q14314 439 aa15.75■□□□□ 0.11
HMGA1-206ENST00000478214 STAT4Q14765 748 aa15.75■□□□□ 0.11
HMGA1-206ENST00000478214 GRM3Q14832 879 aa15.75■□□□□ 0.11
HMGA1-206ENST00000478214 PRAMEF14Q5SWL7 426 aa15.75■□□□□ 0.11
HMGA1-206ENST00000478214 MARC1Q5VT66 337 aa15.75■□□□□ 0.11
HMGA1-206ENST00000478214 KIAA1161Q6NSJ0 714 aa15.75■□□□□ 0.11
HMGA1-206ENST00000478214 PIP4P1Q86T03 277 aa15.75■□□□□ 0.11
HMGA1-206ENST00000478214 ZSWIM9Q86XI8 627 aa15.75■□□□□ 0.11
HMGA1-206ENST00000478214 LRRC49Q8IUZ0 686 aa15.75■□□□□ 0.11
HMGA1-206ENST00000478214 PGBD5Q8N414 524 aa15.75■□□□□ 0.11
HMGA1-206ENST00000478214 MFSD2AQ8NA29 543 aa15.75■□□□□ 0.11
HMGA1-206ENST00000478214 TMEM145Q8NBT3 493 aa15.75■□□□□ 0.11
HMGA1-206ENST00000478214 DEFB124Q8NES8 71 aa15.75■□□□□ 0.11
HMGA1-206ENST00000478214 TPCN2Q8NHX9 752 aa15.75■□□□□ 0.11
HMGA1-206ENST00000478214 LRRN4Q8WUT4 740 aa15.75■□□□□ 0.11
HMGA1-206ENST00000478214 NSMCE1Q8WV22 266 aa15.75■□□□□ 0.11
HMGA1-206ENST00000478214 SKA1Q96BD8 255 aa15.75■□□□□ 0.11
HMGA1-206ENST00000478214 ZNF641Q96N77 438 aaPredicted RBP15.75■□□□□ 0.11
HMGA1-206ENST00000478214 SLC17A9Q9BYT1 436 aa15.75■□□□□ 0.11
HMGA1-206ENST00000478214 LACRTQ9GZZ8 138 aa15.75■□□□□ 0.11
HMGA1-206ENST00000478214 ATP13A3Q9H7F0 1226 aa15.75■□□□□ 0.11
HMGA1-206ENST00000478214 DDX56Q9NY93 547 aaKnown RBP15.75■□□□□ 0.11
HMGA1-206ENST00000478214 PLXNA2O75051 1894 aa15.75■□□□□ 0.11
HMGA1-206ENST00000478214 MED19A0JLT2 244 aaPredicted RBP15.74■□□□□ 0.11
HMGA1-206ENST00000478214 UPK3BL1B0FP48 263 aa15.74■□□□□ 0.11
HMGA1-206ENST00000478214 ZNF487B1APH4 448 aa15.74■□□□□ 0.11
HMGA1-206ENST00000478214 UPK3BL2E5RIL1 263 aa15.74■□□□□ 0.11
HMGA1-206ENST00000478214 TLR4O00206 839 aa15.74■□□□□ 0.11
HMGA1-206ENST00000478214 PAK4O96013 591 aaPredicted RBP15.74■□□□□ 0.11
HMGA1-206ENST00000478214 CR2P20023 1033 aa15.74■□□□□ 0.11
HMGA1-206ENST00000478214 CSRP1P21291 193 aaKnown RBP15.74■□□□□ 0.11
HMGA1-206ENST00000478214 HNRNPA2B1P22626 353 aaKnown RBP15.74■□□□□ 0.11
HMGA1-206ENST00000478214 XPAP23025 273 aaPredicted RBP15.74■□□□□ 0.11
HMGA1-206ENST00000478214 SERPINA4P29622 427 aa15.74■□□□□ 0.11
HMGA1-206ENST00000478214 AKT2P31751 481 aa15.74■□□□□ 0.11
HMGA1-206ENST00000478214 HSPA9P38646 679 aaKnown RBP15.74■□□□□ 0.11
HMGA1-206ENST00000478214 MMP13P45452 471 aa15.74■□□□□ 0.11
HMGA1-206ENST00000478214 NOVA1P51513 510 aaKnown RBP15.74■□□□□ 0.11
HMGA1-206ENST00000478214 MAXP61244 160 aa15.74■□□□□ 0.11
HMGA1-206ENST00000478214 AP1S1P61966 158 aa15.74■□□□□ 0.11
HMGA1-206ENST00000478214 BCL2L1Q07817 233 aa15.74■□□□□ 0.11
HMGA1-206ENST00000478214 SLC14A1Q13336 389 aa15.74■□□□□ 0.11
HMGA1-206ENST00000478214 ZNF423Q2M1K9 1284 aa15.74■□□□□ 0.11
HMGA1-206ENST00000478214 SLC45A4Q5BKX6 768 aa15.74■□□□□ 0.11
HMGA1-206ENST00000478214 CFAP58Q5T655 872 aa15.74■□□□□ 0.11
HMGA1-206ENST00000478214 SLC9A4Q6AI14 798 aa15.74■□□□□ 0.11
HMGA1-206ENST00000478214 PSAPL1Q6NUJ1 521 aa15.74■□□□□ 0.11
HMGA1-206ENST00000478214 C11orf63Q6NUN7 778 aa15.74■□□□□ 0.11
HMGA1-206ENST00000478214 MFSD7Q6UXD7 560 aa15.74■□□□□ 0.11
HMGA1-206ENST00000478214 VSIG1Q86XK7 387 aa15.74■□□□□ 0.11
HMGA1-206ENST00000478214 BBS5Q8N3I7 341 aa15.74■□□□□ 0.11
HMGA1-206ENST00000478214 PLD5Q8N7P1 536 aa15.74■□□□□ 0.11
HMGA1-206ENST00000478214 HCAR2Q8TDS4 363 aa15.74■□□□□ 0.11
HMGA1-206ENST00000478214 C1QTNF2Q9BXJ5 285 aa15.74■□□□□ 0.11
HMGA1-206ENST00000478214 TM7SF3Q9NS93 570 aa15.74■□□□□ 0.11
HMGA1-206ENST00000478214 DTLQ9NZJ0 730 aa15.74■□□□□ 0.11
HMGA1-206ENST00000478214 TRAFD1O14545 582 aaPredicted RBP15.73■□□□□ 0.11
HMGA1-206ENST00000478214 APOL1O14791 398 aa15.73■□□□□ 0.11
HMGA1-206ENST00000478214 RAD51BO15315 384 aa15.73■□□□□ 0.11
HMGA1-206ENST00000478214 PSTPIP1O43586 416 aa15.73■□□□□ 0.11
HMGA1-206ENST00000478214 SH3BP5O60239 455 aa15.73■□□□□ 0.11
HMGA1-206ENST00000478214 MMP20O60882 483 aa15.73■□□□□ 0.11
HMGA1-206ENST00000478214 PRKCGP05129 697 aa15.73■□□□□ 0.11
HMGA1-206ENST00000478214 ZNF883P0CG24 379 aa15.73■□□□□ 0.11
HMGA1-206ENST00000478214 MX2P20592 715 aa15.73■□□□□ 0.11
HMGA1-206ENST00000478214 MARCKSL1P49006 195 aa15.73■□□□□ 0.11
HMGA1-206ENST00000478214 VAV2P52735 878 aa15.73■□□□□ 0.11
HMGA1-206ENST00000478214 CLDN2P57739 230 aa15.73■□□□□ 0.11
HMGA1-206ENST00000478214 NXPH1P58417 271 aa15.73■□□□□ 0.11
HMGA1-206ENST00000478214 IFI16Q16666 785 aaKnown RBP15.73■□□□□ 0.11
HMGA1-206ENST00000478214 UGP2Q16851 508 aa15.73■□□□□ 0.11
HMGA1-206ENST00000478214 ODF2Q5BJF6 829 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms