RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 TYROBPO43914 113 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 HNRNPLP14866 589 aaKnown RBP eCLIP14.75□□□□□ -0.05
HDAC6-220ENST00000477528 PRKCHP24723 683 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 FASP25445 335 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 SMARCB1Q12824 385 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 ARMC12Q5T9G4 340 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 IYDQ6PHW0 289 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 KIAA0408Q6ZU52 694 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 C16orf59Q7L2K0 433 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 GPSM1Q86YR5 675 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 VPS37AQ8NEZ2 397 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 METTL6Q8TCB7 284 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 GFM2Q969S9 779 aaKnown RBP14.75□□□□□ -0.05
HDAC6-220ENST00000477528 EMID1Q96A84 441 aaPredicted RBP14.75□□□□□ -0.05
HDAC6-220ENST00000477528 RCN3Q96D15 328 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 HGH1Q9BTY7 390 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 COPS7BQ9H9Q2 264 aaPredicted RBP14.75□□□□□ -0.05
HDAC6-220ENST00000477528 APPL1Q9UKG1 709 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 PCDHB12Q9Y5F1 795 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 ZNF23P17027 643 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 NMBRP28336 390 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 MAPK1P28482 360 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 TKTP29401 623 aaKnown RBP14.75□□□□□ -0.05
HDAC6-220ENST00000477528 LRPAP1P30533 357 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 RABGGTBP53611 331 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 PSME3P61289 254 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 SP3Q02447 781 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 FNDC5Q8NAU1 212 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 GSTCDQ8NEC7 633 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 SH3GL1Q99961 368 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 SLC25A51Q9H1U9 297 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 AGO3Q9H9G7 860 aaKnown RBP14.75□□□□□ -0.05
HDAC6-220ENST00000477528 GMIPQ9P107 970 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 SLC13A4Q9UKG4 626 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 DDX5P17844 614 aaKnown RBP14.75□□□□□ -0.05
HDAC6-220ENST00000477528 CDC25CP30307 473 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 PLIN5Q00G26 463 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 PLD1Q13393 1074 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 PARP15Q460N3 678 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 ZNF786Q8N393 782 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 ACOX2Q99424 681 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 NMRK1Q9NWW6 199 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 PLA2G4CQ9UP65 541 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 HCRTO43612 131 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 SYNCRIPO60506 623 aaKnown RBP14.75□□□□□ -0.05
HDAC6-220ENST00000477528 KCNA10Q16322 511 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 RTL3Q8N8U3 475 aaKnown RBP14.75□□□□□ -0.05
HDAC6-220ENST00000477528 PIWIL1Q96J94 861 aaKnown RBP14.75□□□□□ -0.05
HDAC6-220ENST00000477528 ZMAT2Q96NC0 199 aaKnown RBP14.75□□□□□ -0.05
HDAC6-220ENST00000477528 WDR55Q9H6Y2 383 aaPredicted RBP14.75□□□□□ -0.05
HDAC6-220ENST00000477528 RMND5AQ9H871 391 aa14.75□□□□□ -0.05
HDAC6-220ENST00000477528 SEMA4BQ9NPR2 832 aaPredicted RBP14.75□□□□□ -0.05
HDAC6-220ENST00000477528 CD3EAPO15446 510 aaKnown RBP14.74□□□□□ -0.05
HDAC6-220ENST00000477528 TAF10Q12962 218 aa14.74□□□□□ -0.05
HDAC6-220ENST00000477528 CYP2R1Q6VVX0 501 aa14.74□□□□□ -0.05
HDAC6-220ENST00000477528 OSTM1Q86WC4 334 aa14.74□□□□□ -0.05
HDAC6-220ENST00000477528 GPR152Q8TDT2 470 aa14.74□□□□□ -0.05
HDAC6-220ENST00000477528 RSPH1Q8WYR4 309 aa14.74□□□□□ -0.05
HDAC6-220ENST00000477528 MLPHQ9BV36 600 aaPredicted RBP14.74□□□□□ -0.05
HDAC6-220ENST00000477528 SEPT4O43236 478 aa14.74□□□□□ -0.05
HDAC6-220ENST00000477528 TTPAP49638 278 aa14.74□□□□□ -0.05
HDAC6-220ENST00000477528 GSCP56915 257 aaPredicted RBP14.74□□□□□ -0.05
HDAC6-220ENST00000477528 BCL2L1Q07817 233 aa14.74□□□□□ -0.05
HDAC6-220ENST00000477528 GSTA3Q16772 222 aa14.74□□□□□ -0.05
HDAC6-220ENST00000477528 IGDCC3Q8IVU1 814 aa14.74□□□□□ -0.05
HDAC6-220ENST00000477528 FBXW8Q8N3Y1 598 aa14.74□□□□□ -0.05
HDAC6-220ENST00000477528 OR4L1Q8NH43 312 aa14.74□□□□□ -0.05
HDAC6-220ENST00000477528 THAP11Q96EK4 314 aa14.74□□□□□ -0.05
HDAC6-220ENST00000477528 DTNBP1Q96EV8 351 aa14.74□□□□□ -0.05
HDAC6-220ENST00000477528 PRPF18Q99633 342 aaKnown RBP14.74□□□□□ -0.05
HDAC6-220ENST00000477528 CCDC28BQ9BUN5 200 aa14.74□□□□□ -0.05
HDAC6-220ENST00000477528 MOSPD1Q9UJG1 213 aa14.74□□□□□ -0.05
HDAC6-220ENST00000477528 TMCO1Q9UM00 188 aa14.74□□□□□ -0.05
HDAC6-220ENST00000477528 CCDC154A6NI56 674 aa14.74□□□□□ -0.05
HDAC6-220ENST00000477528 TRIM38O00635 465 aa14.74□□□□□ -0.05
HDAC6-220ENST00000477528 CCNT2O60583 730 aaKnown RBP14.74□□□□□ -0.05
HDAC6-220ENST00000477528 CES1P23141 567 aa14.74□□□□□ -0.05
HDAC6-220ENST00000477528 NEK3P51956 506 aa14.74□□□□□ -0.05
HDAC6-220ENST00000477528 MAD2L1Q13257 205 aaPredicted RBP14.74□□□□□ -0.05
HDAC6-220ENST00000477528 PAFAH1B3Q15102 231 aaKnown RBP14.74□□□□□ -0.05
HDAC6-220ENST00000477528 CCL14Q16627 93 aa14.74□□□□□ -0.05
HDAC6-220ENST00000477528 DENND1CQ8IV53 801 aa14.74□□□□□ -0.05
HDAC6-220ENST00000477528 TRPC4APQ8TEL6 797 aa14.74□□□□□ -0.05
HDAC6-220ENST00000477528 NXNL1Q96CM4 212 aa14.74□□□□□ -0.05
HDAC6-220ENST00000477528 NPY6RQ99463 290 aa14.74□□□□□ -0.05
HDAC6-220ENST00000477528 AGAP2Q99490 1192 aa14.74□□□□□ -0.05
HDAC6-220ENST00000477528 ACTR8Q9H981 624 aa14.74□□□□□ -0.05
HDAC6-220ENST00000477528 TNPO3Q9Y5L0 923 aaKnown RBP14.74□□□□□ -0.05
HDAC6-220ENST00000477528 C15orf38-AP3S2A0A0A6YYH1 394 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 FKBP9O95302 570 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 MT-CYBP00156 380 aaPredicted RBP14.73□□□□□ -0.05
HDAC6-220ENST00000477528 YBEYP58557 167 aaPredicted RBP14.73□□□□□ -0.05
HDAC6-220ENST00000477528 ATP6V0D1P61421 351 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 FOXD4Q12950 439 aaPredicted RBP14.73□□□□□ -0.05
HDAC6-220ENST00000477528 FKBP9P1Q75LS8 142 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 ARPINQ7Z6K5 226 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 ATAD1Q8NBU5 361 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 OR52K2Q8NGK3 314 aa14.73□□□□□ -0.05
HDAC6-220ENST00000477528 ZSCAN18Q8TBC5 510 aaPredicted RBP14.73□□□□□ -0.05
HDAC6-220ENST00000477528 SIGLEC10Q96LC7 697 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms