RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 TTC7BQ86TV6 843 aa12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 MCOLN2Q8IZK6 566 aa12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 TP53I13Q8NBR0 393 aaPredicted RBP12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 HMCESQ96FZ2 354 aa12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 DCBLD2Q96PD2 775 aa12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 AGPAT1Q99943 283 aa12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 SELENOOQ9BVL4 669 aa12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 BOCQ9BWV1 1114 aa12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 PDFQ9HBH1 243 aa12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 LHX3Q9UBR4 397 aa12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 ARHGEF17Q96PE2 2063 aaPredicted RBP12.41□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 RASA4BC9J798 803 aa12.4□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 TOR1BO14657 336 aa12.4□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 INSIG1O15503 277 aa12.4□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 AQP9O43315 295 aa12.4□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 RASA4O43374 803 aa12.4□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 BUB1O43683 1085 aa12.4□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 MMP20O60882 483 aa12.4□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 JUNDP17535 347 aa12.4□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 TGM2P21980 687 aa12.4□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 EPHB2P29323 1055 aa12.4□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 HTR7P34969 479 aa12.4□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 ACTN2P35609 894 aa12.4□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 IGFALSP35858 605 aa12.4□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 LSSP48449 732 aa12.4□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 SUOXP51687 545 aa12.4□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 TLE3Q04726 772 aa12.4□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 PARP15Q460N3 678 aa12.4□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 TMEM52BQ4KMG9 183 aa12.4□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 HS1BP3Q53T59 392 aa12.4□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 ACAD10Q6JQN1 1059 aa12.4□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 ARFGAP1Q8N6T3 406 aa12.4□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 NETO2Q8NC67 525 aa12.4□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 NEK11Q8NG66 645 aa12.4□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 VCPIP1Q96JH7 1222 aa12.4□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 GDAP1L1Q96MZ0 367 aa12.4□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 CNPY3Q9BT09 278 aa12.4□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 CLPBQ9H078 707 aa12.4□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 TCEAL2Q9H3H9 227 aaPredicted RBP12.4□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 LRRC19Q9H756 370 aa12.4□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 MBNL1Q9NR56 388 aaKnown RBP12.4□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 COL6A6A6NMZ7 2263 aa12.39□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 AHCTF1Q8WYP5 2266 aa12.39□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 LMO7DNF2Z398 122 aa12.39□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 H3BM21 787 aa12.39□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 TK2O00142 265 aa12.39□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 BUB1BO60566 1050 aaPredicted RBP12.39□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 TM7SF2O76062 418 aa12.39□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 TPM2P07951 284 aa12.39□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 SKOR1P84550 965 aa12.39□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 MYL5Q02045 173 aa12.39□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 UBXN1Q04323 297 aa12.39□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 RAD51Q06609 339 aa12.39□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 ISXQ2M1V0 245 aa12.39□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 EFHC2Q5JST6 749 aa12.39□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 AFMIDQ63HM1 303 aa12.39□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 LRRC69Q6ZNQ3 347 aa12.39□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 RYBPQ8N488 228 aaPredicted RBP12.39□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 LSM14AQ8ND56 463 aaKnown RBP12.39□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 IFI44Q8TCB0 444 aa12.39□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 BTN2A2Q8WVV5 523 aa12.39□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 GRAMD1AQ96CP6 724 aa12.39□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 PRR11Q96HE9 360 aaPredicted RBP12.39□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 ZNF578Q96N58 590 aaPredicted RBP12.39□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 MCEEQ96PE7 176 aa12.39□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 DEPDC7Q96QD5 511 aa12.39□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 UBL7Q96S82 380 aaPredicted RBP12.39□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 ASCL3Q9NQ33 180 aa12.39□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 ANO10Q9NW15 660 aa12.39□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 TAS2R14Q9NYV8 317 aa12.39□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 NCKIPSDQ9NZQ3 722 aa12.39□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 MYO6Q9UM54 1294 aa12.39□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 NEMP1O14524 444 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 ATXN7O15265 892 aaPredicted RBP12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 FGF10O15520 208 aaPredicted RBP12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 RRP8O43159 456 aaKnown RBP12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 PRAMEF11O60813 436 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 USP12O75317 370 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 CSO75390 466 aaKnown RBP12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 IGSF6O95976 241 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 MPOP05164 745 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 EIF4A3P38919 411 aaKnown RBP12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 CSNK1DP48730 415 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 PEX5P50542 639 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 NDST2P52849 883 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 ERVPABLB-1P60509 514 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 RHOAP61586 193 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 MAMLD1Q13495 774 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 PTK2BQ14289 1009 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 UGP2Q16851 508 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 KLHL40Q2TBA0 621 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 WSCD2Q2TBF2 565 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 DEFB133Q30KQ1 61 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 LRRC73Q5JTD7 316 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 PLEKHA7Q6IQ23 1121 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 DNAJC24Q6P3W2 148 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 GUSBP11Q6P575 273 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 PCSK4Q6UW60 755 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 MACC1Q6ZN28 852 aa12.38□□□□□ -0.43
MSH5-SAPCD1-205ENST00000476085 CYP4V2Q6ZWL3 525 aaPredicted RBP12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms