RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 CNPY3Q9BT09 278 aa7.11□□□□□ -1.27
HDAC3-207ENST00000475549 CPEB1Q9BZB8 566 aaKnown RBP7.11□□□□□ -1.27
HDAC3-207ENST00000475549 TRIM7Q9C029 511 aa7.11□□□□□ -1.27
HDAC3-207ENST00000475549 CLPBQ9H078 707 aa7.11□□□□□ -1.27
HDAC3-207ENST00000475549 PRORYQ9H606 182 aa7.11□□□□□ -1.27
HDAC3-207ENST00000475549 RYDENQ9NUL5 291 aaKnown RBP7.11□□□□□ -1.27
HDAC3-207ENST00000475549 ANO10Q9NW15 660 aa7.11□□□□□ -1.27
HDAC3-207ENST00000475549 GPATCH2LQ9NWQ4 482 aa7.11□□□□□ -1.27
HDAC3-207ENST00000475549 DKK3Q9UBP4 350 aa7.11□□□□□ -1.27
HDAC3-207ENST00000475549 LHX3Q9UBR4 397 aa7.11□□□□□ -1.27
HDAC3-207ENST00000475549 HPCAL4Q9UM19 191 aa7.11□□□□□ -1.27
HDAC3-207ENST00000475549 DAAM1Q9Y4D1 1078 aa7.11□□□□□ -1.27
HDAC3-207ENST00000475549 CSNK1G3Q9Y6M4 447 aa7.11□□□□□ -1.27
HDAC3-207ENST00000475549 PTPRBP23467 1997 aa7.11□□□□□ -1.27
HDAC3-207ENST00000475549 ACACAQ13085 2346 aa7.11□□□□□ -1.27
HDAC3-207ENST00000475549 NEMP2A6NFY4 417 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 TMEM191CA6NGB0 347 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 TMCO5BA8MYB1 307 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 NEMP1O14524 444 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 FPGTO14772 594 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 MUSKO15146 869 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 YY2O15391 372 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 AQP9O43315 295 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 PRAMEF11O60813 436 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 PIGNO95427 931 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 PRKCGP05129 697 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 MPOP05164 745 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 GP1BAP07359 652 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 JUNDP17535 347 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 CDK11BP21127 795 aaKnown RBP7.1□□□□□ -1.27
HDAC3-207ENST00000475549 EIF4A3P38919 411 aaKnown RBP7.1□□□□□ -1.27
HDAC3-207ENST00000475549 PAPOLAP51003 745 aaKnown RBP7.1□□□□□ -1.27
HDAC3-207ENST00000475549 GEMIN4P57678 1058 aaKnown RBP7.1□□□□□ -1.27
HDAC3-207ENST00000475549 YBEYP58557 167 aaPredicted RBP7.1□□□□□ -1.27
HDAC3-207ENST00000475549 DAB2P98082 770 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 PDAP1Q13442 181 aaKnown RBP7.1□□□□□ -1.27
HDAC3-207ENST00000475549 C1orf61Q13536 156 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 UGP2Q16851 508 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 KLHL40Q2TBA0 621 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 WSCD2Q2TBF2 565 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 PARP15Q460N3 678 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 TMEM52BQ4KMG9 183 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 EFHC2Q5JST6 749 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 PERM1Q5SV97 790 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 AFMIDQ63HM1 303 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 PLEKHA7Q6IQ23 1121 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 DNAJC24Q6P3W2 148 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 GUSBP11Q6P575 273 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 SASS6Q6UVJ0 657 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 PCSK4Q6UW60 755 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 ARHGAP36Q6ZRI8 547 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 VPS36Q86VN1 386 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 CAMK1DQ8IU85 385 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 NPWQ8N729 165 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 SNIP1Q8TAD8 396 aaKnown RBP7.1□□□□□ -1.27
HDAC3-207ENST00000475549 IFI44Q8TCB0 444 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 LMX1AQ8TE12 382 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 CELF6Q96J87 481 aaKnown RBP7.1□□□□□ -1.27
HDAC3-207ENST00000475549 PCMTD1Q96MG8 357 aaPredicted RBP7.1□□□□□ -1.27
HDAC3-207ENST00000475549 GDAP1L1Q96MZ0 367 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 EPAS1Q99814 870 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 WRAP53Q9BUR4 548 aaKnown RBP7.1□□□□□ -1.27
HDAC3-207ENST00000475549 LRRC61Q9BV99 259 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 DUSP23Q9BVJ7 150 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 BOCQ9BWV1 1114 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 OSBPL1AQ9BXW6 950 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 SLC39A8Q9C0K1 460 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 SEPT11Q9NVA2 429 aaKnown RBP7.1□□□□□ -1.27
HDAC3-207ENST00000475549 COQ6Q9Y2Z9 468 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 ARID1BQ8NFD5 2236 aaPredicted RBP7.1□□□□□ -1.27
HDAC3-207ENST00000475549 ASXL3Q9C0F0 2248 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 CFAP46Q8IYW2 2715 aa7.1□□□□□ -1.27
HDAC3-207ENST00000475549 GOLGA4Q13439 2230 aaKnown RBP7.09□□□□□ -1.27
HDAC3-207ENST00000475549 TSPAN11A1L157 253 aa7.09□□□□□ -1.27
HDAC3-207ENST00000475549 TTC24A2A3L6 582 aaPredicted RBP7.09□□□□□ -1.27
HDAC3-207ENST00000475549 CPED1A4D0V7 1026 aa7.09□□□□□ -1.27
HDAC3-207ENST00000475549 EME2A4GXA9 379 aaPredicted RBP7.09□□□□□ -1.27
HDAC3-207ENST00000475549 ZSCAN5CA6NGD5 496 aaPredicted RBP7.09□□□□□ -1.27
HDAC3-207ENST00000475549 LRRC53A6NM62 1247 aa7.09□□□□□ -1.27
HDAC3-207ENST00000475549 DDX3XO00571 662 aaKnown RBP eCLIP7.09□□□□□ -1.27
HDAC3-207ENST00000475549 TPP1O14773 563 aa7.09□□□□□ -1.27
HDAC3-207ENST00000475549 ATMINO43313 823 aaPredicted RBP7.09□□□□□ -1.27
HDAC3-207ENST00000475549 LZTS3O60299 673 aaPredicted RBP7.09□□□□□ -1.27
HDAC3-207ENST00000475549 USP12O75317 370 aa7.09□□□□□ -1.27
HDAC3-207ENST00000475549 CSO75390 466 aaKnown RBP7.09□□□□□ -1.27
HDAC3-207ENST00000475549 C1QL1O75973 258 aa7.09□□□□□ -1.27
HDAC3-207ENST00000475549 TM7SF2O76062 418 aa7.09□□□□□ -1.27
HDAC3-207ENST00000475549 PRB1P04280 392 aa7.09□□□□□ -1.27
HDAC3-207ENST00000475549 TPM2P07951 284 aa7.09□□□□□ -1.27
HDAC3-207ENST00000475549 TCF4P15884 667 aa7.09□□□□□ -1.27
HDAC3-207ENST00000475549 TSHRP16473 764 aa7.09□□□□□ -1.27
HDAC3-207ENST00000475549 FERP16591 822 aa7.09□□□□□ -1.27
HDAC3-207ENST00000475549 GM2AP17900 193 aa7.09□□□□□ -1.27
HDAC3-207ENST00000475549 ABCG1P45844 678 aa7.09□□□□□ -1.27
HDAC3-207ENST00000475549 LSSP48449 732 aa7.09□□□□□ -1.27
HDAC3-207ENST00000475549 PDX1P52945 283 aa7.09□□□□□ -1.27
HDAC3-207ENST00000475549 ADKP55263 362 aaKnown RBP7.09□□□□□ -1.27
HDAC3-207ENST00000475549 RHOAP61586 193 aa7.09□□□□□ -1.27
HDAC3-207ENST00000475549 TLE3Q04726 772 aa7.09□□□□□ -1.27
HDAC3-207ENST00000475549 RALGDSQ12967 914 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms