RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 DPYSQ14117 519 aa14.28□□□□□ -0.12
UPF3A-204ENST00000475218 TXNRD3NBQ6F5E7 133 aa14.28□□□□□ -0.12
UPF3A-204ENST00000475218 ZNF354CQ86Y25 554 aa14.28□□□□□ -0.12
UPF3A-204ENST00000475218 ASB12Q8WXK4 309 aa14.28□□□□□ -0.12
UPF3A-204ENST00000475218 CENPTQ96BT3 561 aa14.28□□□□□ -0.12
UPF3A-204ENST00000475218 CWC15Q9P013 229 aaKnown RBP14.28□□□□□ -0.12
UPF3A-204ENST00000475218 MYO1AQ9UBC5 1043 aa14.28□□□□□ -0.12
UPF3A-204ENST00000475218 DKK3Q9UBP4 350 aa14.28□□□□□ -0.12
UPF3A-204ENST00000475218 U3KQA8 63 aa14.28□□□□□ -0.12
UPF3A-204ENST00000475218 ANKRD36A6QL64 1941 aa14.27□□□□□ -0.12
UPF3A-204ENST00000475218 SPTY2D1-AS1A0A0U1RR47 76 aa14.27□□□□□ -0.12
UPF3A-204ENST00000475218 TSPAN11A1L157 253 aa14.27□□□□□ -0.12
UPF3A-204ENST00000475218 EEF2KO00418 725 aaKnown RBP14.27□□□□□ -0.12
UPF3A-204ENST00000475218 MUSKO15146 869 aa14.27□□□□□ -0.12
UPF3A-204ENST00000475218 RFPL3O75679 317 aa14.27□□□□□ -0.12
UPF3A-204ENST00000475218 IGSF6O95976 241 aa14.27□□□□□ -0.12
UPF3A-204ENST00000475218 IGFALSP35858 605 aa14.27□□□□□ -0.12
UPF3A-204ENST00000475218 PTAR1Q7Z6K3 402 aaPredicted RBP14.27□□□□□ -0.12
UPF3A-204ENST00000475218 GALNT15Q8N3T1 639 aa14.27□□□□□ -0.12
UPF3A-204ENST00000475218 CPEB1Q9BZB8 566 aaKnown RBP14.27□□□□□ -0.12
UPF3A-204ENST00000475218 UBA2Q9UBT2 640 aaPredicted RBP14.27□□□□□ -0.12
UPF3A-204ENST00000475218 NENFQ9UMX5 172 aa14.27□□□□□ -0.12
UPF3A-204ENST00000475218 A0A087X0T9 212 aa14.27□□□□□ -0.13
UPF3A-204ENST00000475218 TRABD2BA6NFA1 517 aa14.27□□□□□ -0.13
UPF3A-204ENST00000475218 MMP20O60882 483 aa14.27□□□□□ -0.13
UPF3A-204ENST00000475218 GYPCP04921 128 aa14.27□□□□□ -0.13
UPF3A-204ENST00000475218 FAM228BP0C875 321 aa14.27□□□□□ -0.13
UPF3A-204ENST00000475218 MYF5P13349 255 aa14.27□□□□□ -0.13
UPF3A-204ENST00000475218 CKMT2P17540 419 aa14.27□□□□□ -0.13
UPF3A-204ENST00000475218 ZNF211Q13398 564 aaPredicted RBP14.27□□□□□ -0.13
UPF3A-204ENST00000475218 TTC7BQ86TV6 843 aa14.27□□□□□ -0.13
UPF3A-204ENST00000475218 TSEN2Q8NCE0 465 aaKnown RBP14.27□□□□□ -0.13
UPF3A-204ENST00000475218 OR4C6Q8NH72 309 aa14.27□□□□□ -0.13
UPF3A-204ENST00000475218 SYN2Q92777 582 aaPredicted RBP14.27□□□□□ -0.13
UPF3A-204ENST00000475218 IFT43Q96FT9 208 aa14.27□□□□□ -0.13
UPF3A-204ENST00000475218 BTBD6Q96KE9 485 aa14.27□□□□□ -0.13
UPF3A-204ENST00000475218 THAP2Q9H0W7 228 aa14.27□□□□□ -0.13
UPF3A-204ENST00000475218 MBNL1Q9NR56 388 aaKnown RBP14.27□□□□□ -0.13
UPF3A-204ENST00000475218 ETNK2Q9NVF9 386 aa14.27□□□□□ -0.13
UPF3A-204ENST00000475218 CAPN11Q9UMQ6 739 aa14.27□□□□□ -0.13
UPF3A-204ENST00000475218 COL27A1Q8IZC6 1860 aaPredicted RBP14.26□□□□□ -0.13
UPF3A-204ENST00000475218 KNTC1P50748 2209 aa14.26□□□□□ -0.13
UPF3A-204ENST00000475218 EIF3CLB5ME19 914 aaKnown RBP14.26□□□□□ -0.13
UPF3A-204ENST00000475218 FFAR2O15552 330 aa14.26□□□□□ -0.13
UPF3A-204ENST00000475218 NEBLO76041 1014 aa14.26□□□□□ -0.13
UPF3A-204ENST00000475218 RNF8O76064 485 aa14.26□□□□□ -0.13
UPF3A-204ENST00000475218 C1SP09871 688 aa14.26□□□□□ -0.13
UPF3A-204ENST00000475218 ACP1P24666 158 aa14.26□□□□□ -0.13
UPF3A-204ENST00000475218 PCK1P35558 622 aa14.26□□□□□ -0.13
UPF3A-204ENST00000475218 HCAR3P49019 387 aa14.26□□□□□ -0.13
UPF3A-204ENST00000475218 UBASH3AP57075 661 aa14.26□□□□□ -0.13
UPF3A-204ENST00000475218 EIF2B5Q13144 721 aaKnown RBP14.26□□□□□ -0.13
UPF3A-204ENST00000475218 PPP6R3Q5H9R7 873 aaPredicted RBP14.26□□□□□ -0.13
UPF3A-204ENST00000475218 NYAP1Q6ZVC0 841 aa14.26□□□□□ -0.13
UPF3A-204ENST00000475218 TMPRSS12Q86WS5 348 aa14.26□□□□□ -0.13
UPF3A-204ENST00000475218 CPNE8Q86YQ8 564 aa14.26□□□□□ -0.13
UPF3A-204ENST00000475218 PSTKQ8IV42 348 aaKnown RBP14.26□□□□□ -0.13
UPF3A-204ENST00000475218 TP53I13Q8NBR0 393 aaPredicted RBP14.26□□□□□ -0.13
UPF3A-204ENST00000475218 ARHGEF26Q96DR7 871 aa14.26□□□□□ -0.13
UPF3A-204ENST00000475218 EIF3CQ99613 913 aaKnown RBP14.26□□□□□ -0.13
UPF3A-204ENST00000475218 CCDC86Q9H6F5 360 aaKnown RBP14.26□□□□□ -0.13
UPF3A-204ENST00000475218 DKK4Q9UBT3 224 aa14.26□□□□□ -0.13
UPF3A-204ENST00000475218 SCINQ9Y6U3 715 aa14.26□□□□□ -0.13
UPF3A-204ENST00000475218 ACACAQ13085 2346 aa14.26□□□□□ -0.13
UPF3A-204ENST00000475218 PRPSAP2O60256 369 aa14.25□□□□□ -0.13
UPF3A-204ENST00000475218 PEX11BO96011 259 aa14.25□□□□□ -0.13
UPF3A-204ENST00000475218 CSF2P04141 144 aa14.25□□□□□ -0.13
UPF3A-204ENST00000475218 MYBL1P10243 752 aa14.25□□□□□ -0.13
UPF3A-204ENST00000475218 NME1P15531 152 aaKnown RBP14.25□□□□□ -0.13
UPF3A-204ENST00000475218 SEMG2Q02383 582 aa14.25□□□□□ -0.13
UPF3A-204ENST00000475218 SGCGQ13326 291 aa14.25□□□□□ -0.13
UPF3A-204ENST00000475218 DPYSL2Q16555 572 aa14.25□□□□□ -0.13
UPF3A-204ENST00000475218 SMTNL2Q2TAL5 461 aa14.25□□□□□ -0.13
UPF3A-204ENST00000475218 ZSCAN23Q3MJ62 389 aa14.25□□□□□ -0.13
UPF3A-204ENST00000475218 TMEM52BQ4KMG9 183 aa14.25□□□□□ -0.13
UPF3A-204ENST00000475218 ZSCAN30Q86W11 494 aa14.25□□□□□ -0.13
UPF3A-204ENST00000475218 CAMK1DQ8IU85 385 aa14.25□□□□□ -0.13
UPF3A-204ENST00000475218 DENND6BQ8NEG7 585 aa14.25□□□□□ -0.13
UPF3A-204ENST00000475218 FAM174AQ8TBP5 190 aa14.25□□□□□ -0.13
UPF3A-204ENST00000475218 CPLX3Q8WVH0 158 aa14.25□□□□□ -0.13
UPF3A-204ENST00000475218 WRAP53Q9BUR4 548 aaKnown RBP14.25□□□□□ -0.13
UPF3A-204ENST00000475218 TCEAL2Q9H3H9 227 aaPredicted RBP14.25□□□□□ -0.13
UPF3A-204ENST00000475218 SUV39H2Q9H5I1 410 aa14.25□□□□□ -0.13
UPF3A-204ENST00000475218 DNAJC28Q9NX36 388 aa14.25□□□□□ -0.13
UPF3A-204ENST00000475218 IFNKQ9P0W0 207 aa14.25□□□□□ -0.13
UPF3A-204ENST00000475218 COQ6Q9Y2Z9 468 aa14.25□□□□□ -0.13
UPF3A-204ENST00000475218 FAM208BQ5VWN6 2430 aa14.25□□□□□ -0.13
UPF3A-204ENST00000475218 NEMP1O14524 444 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 FPGTO14772 594 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 PRKCGP05129 697 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 RABIFP47224 123 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 ZBED6P86452 979 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 INSM1Q01101 510 aaPredicted RBP14.24□□□□□ -0.13
UPF3A-204ENST00000475218 SLC25A11Q02978 314 aaKnown RBP14.24□□□□□ -0.13
UPF3A-204ENST00000475218 CYP4F3Q08477 520 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 PDE1CQ14123 709 aaPredicted RBP14.24□□□□□ -0.13
UPF3A-204ENST00000475218 TDRD12Q587J7 1177 aaKnown RBP14.24□□□□□ -0.13
UPF3A-204ENST00000475218 HES3Q5TGS1 186 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 POLNQ7Z5Q5 900 aa14.24□□□□□ -0.13
UPF3A-204ENST00000475218 VPS36Q86VN1 386 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms