RNA–Protein interactions for RNA: ENST00000474828.1

SCAF11-206, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 757 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-206ENST00000474828 FADS3Q9Y5Q0 445 aa17.12■□□□□ 0.33
SCAF11-206ENST00000474828 LAMA1P25391 3075 aa17.11■□□□□ 0.33
SCAF11-206ENST00000474828 GOLGA6L9A6NEM1 432 aa17.11■□□□□ 0.33
SCAF11-206ENST00000474828 KCNK1O00180 336 aa17.11■□□□□ 0.33
SCAF11-206ENST00000474828 PLK4O00444 970 aa17.11■□□□□ 0.33
SCAF11-206ENST00000474828 FZD6O60353 706 aa17.11■□□□□ 0.33
SCAF11-206ENST00000474828 GJB3O75712 270 aa17.11■□□□□ 0.33
SCAF11-206ENST00000474828 ZNF189O75820 626 aaPredicted RBP17.11■□□□□ 0.33
SCAF11-206ENST00000474828 HLA-DQB2P05538 268 aa17.11■□□□□ 0.33
SCAF11-206ENST00000474828 TIMP2P16035 220 aa17.11■□□□□ 0.33
SCAF11-206ENST00000474828 SERPINA4P29622 427 aa17.11■□□□□ 0.33
SCAF11-206ENST00000474828 NUDT1P36639 197 aa17.11■□□□□ 0.33
SCAF11-206ENST00000474828 ZNF211Q13398 564 aaPredicted RBP17.11■□□□□ 0.33
SCAF11-206ENST00000474828 LLGL1Q15334 1064 aa17.11■□□□□ 0.33
SCAF11-206ENST00000474828 TMEM259Q4ZIN3 620 aa17.11■□□□□ 0.33
SCAF11-206ENST00000474828 TEX44Q53QW1 395 aa17.11■□□□□ 0.33
SCAF11-206ENST00000474828 SLC45A4Q5BKX6 768 aa17.11■□□□□ 0.33
SCAF11-206ENST00000474828 LYSMD4Q5XG99 296 aa17.11■□□□□ 0.33
SCAF11-206ENST00000474828 KIAA0895LQ68EN5 471 aa17.11■□□□□ 0.33
SCAF11-206ENST00000474828 FAM124AQ86V42 546 aa17.11■□□□□ 0.33
SCAF11-206ENST00000474828 ZSWIM9Q86XI8 627 aa17.11■□□□□ 0.33
SCAF11-206ENST00000474828 CAMK1DQ8IU85 385 aa17.11■□□□□ 0.33
SCAF11-206ENST00000474828 SYT12Q8IV01 421 aa17.11■□□□□ 0.33
SCAF11-206ENST00000474828 RYBPQ8N488 228 aaPredicted RBP17.11■□□□□ 0.33
SCAF11-206ENST00000474828 TTC13Q8NBP0 860 aa17.11■□□□□ 0.33
SCAF11-206ENST00000474828 SLC35B2Q8TB61 432 aa17.11■□□□□ 0.33
SCAF11-206ENST00000474828 BIRC7Q96CA5 298 aa17.11■□□□□ 0.33
SCAF11-206ENST00000474828 TEKT5Q96M29 485 aa17.11■□□□□ 0.33
SCAF11-206ENST00000474828 HSPA12BQ96MM6 686 aa17.11■□□□□ 0.33
SCAF11-206ENST00000474828 VAT1Q99536 393 aa17.11■□□□□ 0.33
SCAF11-206ENST00000474828 DYRK4Q9NR20 520 aa17.11■□□□□ 0.33
SCAF11-206ENST00000474828 HAUS2Q9NVX0 235 aa17.11■□□□□ 0.33
SCAF11-206ENST00000474828 PPIL1Q9Y3C6 166 aa17.11■□□□□ 0.33
SCAF11-206ENST00000474828 PTPRZ1P23471 2315 aaPredicted RBP17.1■□□□□ 0.33
SCAF11-206ENST00000474828 PIGNO95427 931 aa17.1■□□□□ 0.33
SCAF11-206ENST00000474828 JCHAINP01591 159 aa17.1■□□□□ 0.33
SCAF11-206ENST00000474828 MMP2P08253 660 aa17.1■□□□□ 0.33
SCAF11-206ENST00000474828 ABL2P42684 1182 aa17.1■□□□□ 0.33
SCAF11-206ENST00000474828 SCNN1BP51168 640 aa17.1■□□□□ 0.33
SCAF11-206ENST00000474828 OTUD4Q01804 1114 aaKnown RBP17.1■□□□□ 0.33
SCAF11-206ENST00000474828 WDR45BQ5MNZ6 344 aa17.1■□□□□ 0.33
SCAF11-206ENST00000474828 OR14C36Q8NHC7 312 aa17.1■□□□□ 0.33
SCAF11-206ENST00000474828 LRRN4Q8WUT4 740 aa17.1■□□□□ 0.33
SCAF11-206ENST00000474828 ASB12Q8WXK4 309 aa17.1■□□□□ 0.33
SCAF11-206ENST00000474828 FRMD8P1Q9BZ68 369 aaPredicted RBP17.1■□□□□ 0.33
SCAF11-206ENST00000474828 NT5MQ9NPB1 228 aa17.1■□□□□ 0.33
SCAF11-206ENST00000474828 TMEM74BQ9NUR3 256 aa17.1■□□□□ 0.33
SCAF11-206ENST00000474828 THADAQ6YHU6 1953 aa17.09■□□□□ 0.33
SCAF11-206ENST00000474828 CFAP69A5D8W1 941 aa17.09■□□□□ 0.33
SCAF11-206ENST00000474828 USP27XA6NNY8 438 aa17.09■□□□□ 0.33
SCAF11-206ENST00000474828 TSPAN6O43657 245 aa17.09■□□□□ 0.33
SCAF11-206ENST00000474828 ZNF806P0C7X5 589 aa17.09■□□□□ 0.33
SCAF11-206ENST00000474828 ITPKAP23677 461 aa17.09■□□□□ 0.33
SCAF11-206ENST00000474828 PTPN3P26045 913 aa17.09■□□□□ 0.33
SCAF11-206ENST00000474828 CD27P26842 260 aa17.09■□□□□ 0.33
SCAF11-206ENST00000474828 MPLP40238 635 aa17.09■□□□□ 0.33
SCAF11-206ENST00000474828 MAXP61244 160 aa17.09■□□□□ 0.33
SCAF11-206ENST00000474828 BCL2L1Q07817 233 aa17.09■□□□□ 0.33
SCAF11-206ENST00000474828 NIPAL4Q0D2K0 466 aa17.09■□□□□ 0.33
SCAF11-206ENST00000474828 AP1B1Q10567 949 aa17.09■□□□□ 0.33
SCAF11-206ENST00000474828 SIX1Q15475 284 aaPredicted RBP17.09■□□□□ 0.33
SCAF11-206ENST00000474828 CSRP2Q16527 193 aa17.09■□□□□ 0.33
SCAF11-206ENST00000474828 LPAL2Q16609 132 aa17.09■□□□□ 0.33
SCAF11-206ENST00000474828 UGP2Q16851 508 aa17.09■□□□□ 0.33
SCAF11-206ENST00000474828 POM121L1PQ3SYA9 428 aa17.09■□□□□ 0.33
SCAF11-206ENST00000474828 TMEM52BQ4KMG9 183 aa17.09■□□□□ 0.33
SCAF11-206ENST00000474828 SYCP2LQ5T4T6 812 aa17.09■□□□□ 0.33
SCAF11-206ENST00000474828 SLC13A5Q86YT5 568 aaPredicted RBP17.09■□□□□ 0.33
SCAF11-206ENST00000474828 KLHDC8BQ8IXV7 354 aa17.09■□□□□ 0.33
SCAF11-206ENST00000474828 GANCQ8TET4 914 aa17.09■□□□□ 0.33
SCAF11-206ENST00000474828 IMP4Q96G21 291 aaKnown RBP17.09■□□□□ 0.33
SCAF11-206ENST00000474828 SEMA3CQ99985 751 aa17.09■□□□□ 0.33
SCAF11-206ENST00000474828 SLC25A51Q9H1U9 297 aa17.09■□□□□ 0.33
SCAF11-206ENST00000474828 EBF2Q9HAK2 575 aa17.09■□□□□ 0.33
SCAF11-206ENST00000474828 USP29Q9HBJ7 922 aa17.09■□□□□ 0.33
SCAF11-206ENST00000474828 SCUBE2Q9NQ36 999 aa17.09■□□□□ 0.33
SCAF11-206ENST00000474828 GMEB2Q9UKD1 530 aa17.09■□□□□ 0.33
SCAF11-206ENST00000474828 TTC7AQ9ULT0 858 aaPredicted RBP17.09■□□□□ 0.33
SCAF11-206ENST00000474828 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.09■□□□□ 0.33
SCAF11-206ENST00000474828 NUMA1Q14980 2115 aa17.09■□□□□ 0.33
SCAF11-206ENST00000474828 GVINP1Q7Z2Y8 2422 aa17.09■□□□□ 0.33
SCAF11-206ENST00000474828 CEP192Q8TEP8 1941 aa17.08■□□□□ 0.33
SCAF11-206ENST00000474828 A0A1W2PPC4 97 aa17.08■□□□□ 0.32
SCAF11-206ENST00000474828 TCRBV7S2A1N4TA0A589 114 aa17.08■□□□□ 0.32
SCAF11-206ENST00000474828 UPK3BL1B0FP48 263 aa17.08■□□□□ 0.32
SCAF11-206ENST00000474828 UPK3BL2E5RIL1 263 aa17.08■□□□□ 0.32
SCAF11-206ENST00000474828 FOXD2O60548 495 aaPredicted RBP17.08■□□□□ 0.32
SCAF11-206ENST00000474828 CD68P34810 354 aaPredicted RBP17.08■□□□□ 0.32
SCAF11-206ENST00000474828 DHPSP49366 369 aaPredicted RBP17.08■□□□□ 0.32
SCAF11-206ENST00000474828 TRAF2Q12933 501 aa17.08■□□□□ 0.32
SCAF11-206ENST00000474828 AGERQ15109 404 aa17.08■□□□□ 0.32
SCAF11-206ENST00000474828 ZNF284Q2VY69 593 aa17.08■□□□□ 0.32
SCAF11-206ENST00000474828 KIAA1161Q6NSJ0 714 aa17.08■□□□□ 0.32
SCAF11-206ENST00000474828 FBXL19Q6PCT2 694 aa17.08■□□□□ 0.32
SCAF11-206ENST00000474828 SLC23A3Q6PIS1 610 aa17.08■□□□□ 0.32
SCAF11-206ENST00000474828 CYP2U1Q7Z449 544 aa17.08■□□□□ 0.32
SCAF11-206ENST00000474828 RABEPKQ7Z6M1 372 aa17.08■□□□□ 0.32
SCAF11-206ENST00000474828 PRPF39Q86UA1 669 aaKnown RBP17.08■□□□□ 0.32
SCAF11-206ENST00000474828 HORMAD1Q86X24 394 aa17.08■□□□□ 0.32
SCAF11-206ENST00000474828 CBARPQ8N350 705 aaPredicted RBP17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms