RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 METTL12A8MUP2 240 aa12.07□□□□□ -0.48
VPS13D-204ENST00000469054 TRAFD1O14545 582 aaPredicted RBP12.07□□□□□ -0.48
VPS13D-204ENST00000469054 CEP104O60308 925 aa12.07□□□□□ -0.48
VPS13D-204ENST00000469054 ATP1A1P05023 1023 aaKnown RBP12.07□□□□□ -0.48
VPS13D-204ENST00000469054 RBL1P28749 1068 aa12.07□□□□□ -0.48
VPS13D-204ENST00000469054 CXCR5P32302 372 aa12.07□□□□□ -0.48
VPS13D-204ENST00000469054 PTGER3P43115 390 aa12.07□□□□□ -0.48
VPS13D-204ENST00000469054 TAS2R38P59533 333 aa12.07□□□□□ -0.48
VPS13D-204ENST00000469054 DSC2Q02487 901 aa12.07□□□□□ -0.48
VPS13D-204ENST00000469054 WASHC5Q12768 1159 aa12.07□□□□□ -0.48
VPS13D-204ENST00000469054 FAM182AQ5T1J6 154 aa12.07□□□□□ -0.48
VPS13D-204ENST00000469054 CFAP58Q5T655 872 aa12.07□□□□□ -0.48
VPS13D-204ENST00000469054 DARS2Q6PI48 645 aaKnown RBP12.07□□□□□ -0.48
VPS13D-204ENST00000469054 BRAT1Q6PJG6 821 aa12.07□□□□□ -0.48
VPS13D-204ENST00000469054 PARS2Q7L3T8 475 aaKnown RBP12.07□□□□□ -0.48
VPS13D-204ENST00000469054 TTC7BQ86TV6 843 aa12.07□□□□□ -0.48
VPS13D-204ENST00000469054 SLC41A1Q8IVJ1 513 aa12.07□□□□□ -0.48
VPS13D-204ENST00000469054 CDKL3Q8IVW4 592 aaPredicted RBP12.07□□□□□ -0.48
VPS13D-204ENST00000469054 ARRDC2Q8TBH0 407 aa12.07□□□□□ -0.48
VPS13D-204ENST00000469054 ECHDC3Q96DC8 303 aa12.07□□□□□ -0.48
VPS13D-204ENST00000469054 PBKQ96KB5 322 aa12.07□□□□□ -0.48
VPS13D-204ENST00000469054 TEKT5Q96M29 485 aa12.07□□□□□ -0.48
VPS13D-204ENST00000469054 HSPA12BQ96MM6 686 aa12.07□□□□□ -0.48
VPS13D-204ENST00000469054 AGAP3Q96P47 875 aa12.07□□□□□ -0.48
VPS13D-204ENST00000469054 VAT1Q99536 393 aa12.07□□□□□ -0.48
VPS13D-204ENST00000469054 FERMT1Q9BQL6 677 aa12.07□□□□□ -0.48
VPS13D-204ENST00000469054 CEP41Q9BYV8 373 aa12.07□□□□□ -0.48
VPS13D-204ENST00000469054 C10orf88Q9H8K7 445 aa12.07□□□□□ -0.48
VPS13D-204ENST00000469054 GMEB2Q9UKD1 530 aa12.07□□□□□ -0.48
VPS13D-204ENST00000469054 R3HDM2Q9Y2K5 976 aaKnown RBP12.07□□□□□ -0.48
VPS13D-204ENST00000469054 WDFY4Q6ZS81 3184 aa12.07□□□□□ -0.48
VPS13D-204ENST00000469054 NYNRINQ9P2P1 1898 aaKnown RBP12.06□□□□□ -0.48
VPS13D-204ENST00000469054 TBC1D3DA0A087WVF3 549 aa12.06□□□□□ -0.48
VPS13D-204ENST00000469054 TBC1D3IA0A087WXS9 549 aa12.06□□□□□ -0.48
VPS13D-204ENST00000469054 TBC1D3EA0A087X179 549 aa12.06□□□□□ -0.48
VPS13D-204ENST00000469054 TBC1D3KA0A087X1G2 549 aa12.06□□□□□ -0.48
VPS13D-204ENST00000469054 A0A1W2PQ67 120 aa12.06□□□□□ -0.48
VPS13D-204ENST00000469054 TSPAN11A1L157 253 aa12.06□□□□□ -0.48
VPS13D-204ENST00000469054 TBC1D3FA6NER0 549 aaPredicted RBP12.06□□□□□ -0.48
VPS13D-204ENST00000469054 C10orf142B7Z368 130 aa12.06□□□□□ -0.48
VPS13D-204ENST00000469054 TBC1D3LB9A6J9 549 aa12.06□□□□□ -0.48
VPS13D-204ENST00000469054 HTRA2O43464 458 aaPredicted RBP12.06□□□□□ -0.48
VPS13D-204ENST00000469054 SOCS5O75159 536 aa12.06□□□□□ -0.48
VPS13D-204ENST00000469054 RETP07949 1114 aa12.06□□□□□ -0.48
VPS13D-204ENST00000469054 TBC1D3HP0C7X1 549 aa12.06□□□□□ -0.48
VPS13D-204ENST00000469054 TIMP2P16035 220 aa12.06□□□□□ -0.48
VPS13D-204ENST00000469054 ABL2P42684 1182 aa12.06□□□□□ -0.48
VPS13D-204ENST00000469054 GNG11P61952 73 aa12.06□□□□□ -0.48
VPS13D-204ENST00000469054 NIPAL4Q0D2K0 466 aa12.06□□□□□ -0.48
VPS13D-204ENST00000469054 UGP2Q16851 508 aa12.06□□□□□ -0.48
VPS13D-204ENST00000469054 WDR45BQ5MNZ6 344 aa12.06□□□□□ -0.48
VPS13D-204ENST00000469054 SYCP2LQ5T4T6 812 aa12.06□□□□□ -0.48
VPS13D-204ENST00000469054 LYSMD4Q5XG99 296 aa12.06□□□□□ -0.48
VPS13D-204ENST00000469054 KIAA0895LQ68EN5 471 aa12.06□□□□□ -0.48
VPS13D-204ENST00000469054 TBC1D3GQ6DHY5 549 aa12.06□□□□□ -0.48
VPS13D-204ENST00000469054 TBC1D3CQ6IPX1 549 aa12.06□□□□□ -0.48
VPS13D-204ENST00000469054 NEK5Q6P3R8 708 aa12.06□□□□□ -0.48
VPS13D-204ENST00000469054 ARMCX6Q7L4S7 300 aa12.06□□□□□ -0.48
VPS13D-204ENST00000469054 TBC1D3Q8IZP1 549 aaPredicted RBP12.06□□□□□ -0.48
VPS13D-204ENST00000469054 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.06□□□□□ -0.48
VPS13D-204ENST00000469054 SLC35B2Q8TB61 432 aa12.06□□□□□ -0.48
VPS13D-204ENST00000469054 FRMD8P1Q9BZ68 369 aaPredicted RBP12.06□□□□□ -0.48
VPS13D-204ENST00000469054 PREBQ9HCU5 417 aa12.06□□□□□ -0.48
VPS13D-204ENST00000469054 KLHL8Q9P2G9 620 aaPredicted RBP12.06□□□□□ -0.48
VPS13D-204ENST00000469054 PCDHGC4Q9Y5F7 938 aa12.06□□□□□ -0.48
VPS13D-204ENST00000469054 PCDHGA5Q9Y5G8 931 aa12.06□□□□□ -0.48
VPS13D-204ENST00000469054 FADS3Q9Y5Q0 445 aa12.06□□□□□ -0.48
VPS13D-204ENST00000469054 USP34Q70CQ2 3546 aa12.06□□□□□ -0.48
VPS13D-204ENST00000469054 PRR23AA6NEV1 266 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 MEI4A8MW99 385 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 UPK3BL1B0FP48 263 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 UPK3BL2E5RIL1 263 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 AREL1O15033 823 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 AP1G1O43747 822 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 ZNF189O75820 626 aaPredicted RBP12.05□□□□□ -0.48
VPS13D-204ENST00000469054 FSBPO95073 299 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 EPN2O95208 641 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 PGLSO95336 258 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 FGGP02679 453 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 SERPINF2P08697 491 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 XPAP23025 273 aaPredicted RBP12.05□□□□□ -0.48
VPS13D-204ENST00000469054 ITPKAP23677 461 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 MAOBP27338 520 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 CD68P34810 354 aaPredicted RBP12.05□□□□□ -0.48
VPS13D-204ENST00000469054 CCR5P51681 352 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 SUOXP51687 545 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 POLR2LP62875 67 aaKnown RBP12.05□□□□□ -0.48
VPS13D-204ENST00000469054 SKOR1P84550 965 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 CREB5Q02930 508 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 TRAF2Q12933 501 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 IHHQ14623 411 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 SIX1Q15475 284 aaPredicted RBP12.05□□□□□ -0.48
VPS13D-204ENST00000469054 HS1BP3Q53T59 392 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 ASCL5Q7RTU5 278 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 PID1Q7Z2X4 250 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 ADAT2Q7Z6V5 191 aaKnown RBP12.05□□□□□ -0.48
VPS13D-204ENST00000469054 ZSWIM9Q86XI8 627 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 RGL4Q8IZJ4 473 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 ZNF567Q8N184 647 aa12.05□□□□□ -0.48
VPS13D-204ENST00000469054 C17orf53Q8N3J3 647 aaPredicted RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms