RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	DNA2	P51530	1060 aa		11.31	□□□□□ -0.6
PTPN7-204	ENST00000462815	ADK	P55263	362 aa	Known RBP	11.31	□□□□□ -0.6
PTPN7-204	ENST00000462815	HDAC4	P56524	1084 aa		11.31	□□□□□ -0.6
PTPN7-204	ENST00000462815	YPEL5	P62699	121 aa		11.31	□□□□□ -0.6
PTPN7-204	ENST00000462815	ATP11A	P98196	1134 aa		11.31	□□□□□ -0.6
PTPN7-204	ENST00000462815	SGCG	Q13326	291 aa		11.31	□□□□□ -0.6
PTPN7-204	ENST00000462815	CAMK4	Q16566	473 aa		11.31	□□□□□ -0.6
PTPN7-204	ENST00000462815	MYLK3	Q32MK0	819 aa		11.31	□□□□□ -0.6
PTPN7-204	ENST00000462815	PRRT3	Q5FWE3	981 aa		11.31	□□□□□ -0.6
PTPN7-204	ENST00000462815	ATXN7L2	Q5T6C5	722 aa	Predicted RBP	11.31	□□□□□ -0.6
PTPN7-204	ENST00000462815	KIAA1614	Q5VZ46	1190 aa		11.31	□□□□□ -0.6
PTPN7-204	ENST00000462815	NAA35	Q5VZE5	725 aa		11.31	□□□□□ -0.6
PTPN7-204	ENST00000462815	LEKR1	Q6ZMV7	388 aa		11.31	□□□□□ -0.6
PTPN7-204	ENST00000462815	B3GNT8	Q7Z7M8	397 aa		11.31	□□□□□ -0.6
PTPN7-204	ENST00000462815	CREBRF	Q8IUR6	639 aa		11.31	□□□□□ -0.6
PTPN7-204	ENST00000462815	CCDC185	Q8N715	623 aa		11.31	□□□□□ -0.6
PTPN7-204	ENST00000462815	TPCN2	Q8NHX9	752 aa		11.31	□□□□□ -0.6
PTPN7-204	ENST00000462815	JOSD2	Q8TAC2	188 aa		11.31	□□□□□ -0.6
PTPN7-204	ENST00000462815	SLC20A1	Q8WUM9	679 aa		11.31	□□□□□ -0.6
PTPN7-204	ENST00000462815	LIN37	Q96GY3	246 aa	Predicted RBP	11.31	□□□□□ -0.6
PTPN7-204	ENST00000462815	KLHL32	Q96NJ5	620 aa		11.31	□□□□□ -0.6
PTPN7-204	ENST00000462815	EPAS1	Q99814	870 aa		11.31	□□□□□ -0.6
PTPN7-204	ENST00000462815	CCDC3	Q9BQI4	270 aa		11.31	□□□□□ -0.6
PTPN7-204	ENST00000462815	OSBPL1A	Q9BXW6	950 aa		11.31	□□□□□ -0.6
PTPN7-204	ENST00000462815	MAGEH1	Q9H213	219 aa		11.31	□□□□□ -0.6
PTPN7-204	ENST00000462815	GAN	Q9H2C0	597 aa		11.31	□□□□□ -0.6
PTPN7-204	ENST00000462815	EVA1B	Q9NVM1	165 aa		11.31	□□□□□ -0.6
PTPN7-204	ENST00000462815	SPAST	Q9UBP0	616 aa		11.31	□□□□□ -0.6
PTPN7-204	ENST00000462815	DNAI1	Q9UI46	699 aa		11.31	□□□□□ -0.6
PTPN7-204	ENST00000462815	ACSL6	Q9UKU0	697 aa		11.31	□□□□□ -0.6
PTPN7-204	ENST00000462815	MFHAS1	Q9Y4C4	1052 aa		11.31	□□□□□ -0.6
PTPN7-204	ENST00000462815	FLNC	Q14315	2725 aa		11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	RELN	P78509	3460 aa		11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815		A0A1W2PQM1	296 aa		11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	TSPAN11	A1L157	253 aa		11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815		B8ZZF3	427 aa		11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	PYCARD-AS1	I3L0S3	204 aa		11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	KRIT1	O00522	736 aa		11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	TOR1B	O14657	336 aa		11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	KDELR3	O43731	214 aa		11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	MMP20	O60882	483 aa		11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	TMCC1	O94876	653 aa		11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	POP4	O95707	220 aa	Known RBP	11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	ITGA2B	P08514	1039 aa		11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	TIMP2	P16035	220 aa		11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	ETFB	P38117	255 aa		11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	PTPN9	P43378	593 aa		11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	GSC	P56915	257 aa	Predicted RBP	11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	FMO1	Q01740	532 aa		11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	RAPGEF1	Q13905	1077 aa		11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	IRF4	Q15306	451 aa		11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	ALG11	Q2TAA5	492 aa		11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	ARL13B	Q3SXY8	428 aa		11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	GDPD4	Q6W3E5	623 aa		11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	STRADA	Q7RTN6	431 aa		11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	VPS36	Q86VN1	386 aa		11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	MLKL	Q8NB16	471 aa		11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	KY	Q8NBH2	561 aa		11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	NETO2	Q8NC67	525 aa		11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	WDR36	Q8NI36	951 aa	Known RBP	11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	GPT2	Q8TD30	523 aa		11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	RXFP2	Q8WXD0	754 aa		11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	NAT6	Q93015	286 aa		11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	FUBP1	Q96AE4	644 aa	Known RBP	11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	IL12RB2	Q99665	862 aa		11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	TUBGCP2	Q9BSJ2	902 aa		11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	DKK3	Q9UBP4	350 aa		11.3	□□□□□ -0.6
PTPN7-204	ENST00000462815	CCDC187	A0A096LP49	1063 aa		11.29	□□□□□ -0.6
PTPN7-204	ENST00000462815	TCRBV5S1A1T	A0A578	114 aa		11.29	□□□□□ -0.6
PTPN7-204	ENST00000462815	INSIG1	O15503	277 aa		11.29	□□□□□ -0.6
PTPN7-204	ENST00000462815	TNFSF15	O95150	251 aa		11.29	□□□□□ -0.6
PTPN7-204	ENST00000462815	KRT10	P13645	584 aa		11.29	□□□□□ -0.6
PTPN7-204	ENST00000462815	RBMS1	P29558	406 aa	Known RBP	11.29	□□□□□ -0.6
PTPN7-204	ENST00000462815	EIF4A3	P38919	411 aa	Known RBP	11.29	□□□□□ -0.6
PTPN7-204	ENST00000462815	GEMIN4	P57678	1058 aa	Known RBP	11.29	□□□□□ -0.6
PTPN7-204	ENST00000462815	SNRPD1	P62314	119 aa	Known RBP	11.29	□□□□□ -0.6
PTPN7-204	ENST00000462815	SRSF6	Q13247	344 aa	Known RBP	11.29	□□□□□ -0.6
PTPN7-204	ENST00000462815	PTK2B	Q14289	1009 aa		11.29	□□□□□ -0.6
PTPN7-204	ENST00000462815	AGER	Q15109	404 aa		11.29	□□□□□ -0.6
PTPN7-204	ENST00000462815	KLHL40	Q2TBA0	621 aa		11.29	□□□□□ -0.6
PTPN7-204	ENST00000462815	WSCD2	Q2TBF2	565 aa		11.29	□□□□□ -0.6
PTPN7-204	ENST00000462815	DPCR1	Q3MIW9	517 aa		11.29	□□□□□ -0.6
PTPN7-204	ENST00000462815	LINC00303	Q3SY05	128 aa		11.29	□□□□□ -0.6
PTPN7-204	ENST00000462815	TMEM52B	Q4KMG9	183 aa		11.29	□□□□□ -0.6
PTPN7-204	ENST00000462815	ZSWIM9	Q86XI8	627 aa		11.29	□□□□□ -0.6
PTPN7-204	ENST00000462815	PYROXD2	Q8N2H3	581 aa		11.29	□□□□□ -0.6
PTPN7-204	ENST00000462815	ARL10	Q8N8L6	244 aa		11.29	□□□□□ -0.6
PTPN7-204	ENST00000462815	EXD3	Q8N9H8	876 aa		11.29	□□□□□ -0.6
PTPN7-204	ENST00000462815	WDR48	Q8TAF3	677 aa		11.29	□□□□□ -0.6
PTPN7-204	ENST00000462815	NTAN1	Q96AB6	310 aa		11.29	□□□□□ -0.6
PTPN7-204	ENST00000462815	TBC1D31	Q96DN5	1066 aa		11.29	□□□□□ -0.6
PTPN7-204	ENST00000462815	ARHGEF26	Q96DR7	871 aa		11.29	□□□□□ -0.6
PTPN7-204	ENST00000462815	MED8	Q96G25	268 aa		11.29	□□□□□ -0.6
PTPN7-204	ENST00000462815	STK33	Q9BYT3	514 aa		11.29	□□□□□ -0.6
PTPN7-204	ENST00000462815	TTYH3	Q9C0H2	523 aa		11.29	□□□□□ -0.6
PTPN7-204	ENST00000462815	LHX3	Q9UBR4	397 aa		11.29	□□□□□ -0.6
PTPN7-204	ENST00000462815	IPO11	Q9UI26	975 aa	Known RBP	11.29	□□□□□ -0.6
PTPN7-204	ENST00000462815	PADI4	Q9UM07	663 aa		11.29	□□□□□ -0.6
PTPN7-204	ENST00000462815	PCDHGA7	Q9Y5G6	932 aa		11.29	□□□□□ -0.6
PTPN7-204	ENST00000462815	NAV2	Q8IVL1	2488 aa		11.29	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms