RNA–Protein interactions for RNA: ENST00000460940.5

APTX-209, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,874 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-209	ENST00000460940	FBXL12	Q9NXK8	326 aa		11.23	□□□□□ -0.61
APTX-209	ENST00000460940	WASF2	Q9Y6W5	498 aa		11.23	□□□□□ -0.61
APTX-209	ENST00000460940	OTOGL	Q3ZCN5	2332 aa		11.23	□□□□□ -0.61
APTX-209	ENST00000460940	SRRM3	A6NNA2	597 aa	Predicted RBP	11.23	□□□□□ -0.61
APTX-209	ENST00000460940	NDUFS2	O75306	463 aa		11.23	□□□□□ -0.61
APTX-209	ENST00000460940	RNASEH2A	O75792	299 aa	Known RBP	11.23	□□□□□ -0.61
APTX-209	ENST00000460940	RASSF9	O75901	435 aa		11.23	□□□□□ -0.61
APTX-209	ENST00000460940	PEX11B	O96011	259 aa		11.23	□□□□□ -0.61
APTX-209	ENST00000460940	CTSL	P07711	333 aa		11.23	□□□□□ -0.61
APTX-209	ENST00000460940	BCKDHB	P21953	392 aa		11.23	□□□□□ -0.61
APTX-209	ENST00000460940	CCNC	P24863	283 aa		11.23	□□□□□ -0.61
APTX-209	ENST00000460940	DPP6	P42658	865 aa		11.23	□□□□□ -0.61
APTX-209	ENST00000460940	RPL6	Q02878	288 aa	Known RBP	11.23	□□□□□ -0.61
APTX-209	ENST00000460940	MYLK3	Q32MK0	819 aa		11.23	□□□□□ -0.61
APTX-209	ENST00000460940	BBS12	Q6ZW61	710 aa		11.23	□□□□□ -0.61
APTX-209	ENST00000460940	RYBP	Q8N488	228 aa	Predicted RBP	11.23	□□□□□ -0.61
APTX-209	ENST00000460940	AADAT	Q8N5Z0	425 aa		11.23	□□□□□ -0.61
APTX-209	ENST00000460940	FAM160A2	Q8N612	972 aa	Predicted RBP	11.23	□□□□□ -0.61
APTX-209	ENST00000460940	CADM4	Q8NFZ8	388 aa		11.23	□□□□□ -0.61
APTX-209	ENST00000460940	GRIN3A	Q8TCU5	1115 aa		11.23	□□□□□ -0.61
APTX-209	ENST00000460940	GANC	Q8TET4	914 aa		11.23	□□□□□ -0.61
APTX-209	ENST00000460940	ALG3	Q92685	438 aa		11.23	□□□□□ -0.61
APTX-209	ENST00000460940	FOXJ1	Q92949	421 aa		11.23	□□□□□ -0.61
APTX-209	ENST00000460940	TOE1	Q96GM8	510 aa	Known RBP	11.23	□□□□□ -0.61
APTX-209	ENST00000460940	OLFM3	Q96PB7	478 aa		11.23	□□□□□ -0.61
APTX-209	ENST00000460940	BTBD1	Q9H0C5	482 aa		11.23	□□□□□ -0.61
APTX-209	ENST00000460940	DUSP15	Q9H1R2	295 aa	Predicted RBP	11.23	□□□□□ -0.61
APTX-209	ENST00000460940	ZDHHC6	Q9H6R6	413 aa		11.23	□□□□□ -0.61
APTX-209	ENST00000460940	CD93	Q9NPY3	652 aa		11.23	□□□□□ -0.61
APTX-209	ENST00000460940	KLC4	Q9NSK0	619 aa		11.23	□□□□□ -0.61
APTX-209	ENST00000460940	WSB2	Q9NYS7	404 aa	Predicted RBP	11.23	□□□□□ -0.61
APTX-209	ENST00000460940	AMACR	Q9UHK6	382 aa		11.23	□□□□□ -0.61
APTX-209	ENST00000460940	INVS	Q9Y283	1065 aa		11.23	□□□□□ -0.61
APTX-209	ENST00000460940	HEY1	Q9Y5J3	304 aa		11.23	□□□□□ -0.61
APTX-209	ENST00000460940	NUP205	Q92621	2012 aa		11.22	□□□□□ -0.61
APTX-209	ENST00000460940		A0A1W2PP55	124 aa		11.22	□□□□□ -0.61
APTX-209	ENST00000460940	PRR23A	A6NEV1	266 aa		11.22	□□□□□ -0.61
APTX-209	ENST00000460940	AGPS	O00116	658 aa		11.22	□□□□□ -0.61
APTX-209	ENST00000460940	KPNA3	O00505	521 aa	Predicted RBP	11.22	□□□□□ -0.61
APTX-209	ENST00000460940	MATN3	O15232	486 aa		11.22	□□□□□ -0.61
APTX-209	ENST00000460940	CST8	O60676	142 aa		11.22	□□□□□ -0.61
APTX-209	ENST00000460940	LEFTY1	O75610	366 aa		11.22	□□□□□ -0.61
APTX-209	ENST00000460940	ITGB7	P26010	798 aa		11.22	□□□□□ -0.61
APTX-209	ENST00000460940	PLA2G5	P39877	138 aa		11.22	□□□□□ -0.61
APTX-209	ENST00000460940	AP1S1	P61966	158 aa		11.22	□□□□□ -0.61
APTX-209	ENST00000460940	DYNLT1	P63172	113 aa		11.22	□□□□□ -0.61
APTX-209	ENST00000460940	ACTN3	Q08043	901 aa	Predicted RBP	11.22	□□□□□ -0.61
APTX-209	ENST00000460940	PPID	Q08752	370 aa	Known RBP	11.22	□□□□□ -0.61
APTX-209	ENST00000460940	NSUN2	Q08J23	767 aa	Known RBP eCLIP	11.22	□□□□□ -0.61
APTX-209	ENST00000460940	HNRNPD	Q14103	355 aa	Known RBP	11.22	□□□□□ -0.61
APTX-209	ENST00000460940	ARSI	Q5FYB1	569 aa		11.22	□□□□□ -0.61
APTX-209	ENST00000460940	RALGPS1	Q5JS13	557 aa		11.22	□□□□□ -0.61
APTX-209	ENST00000460940	ATXN7L2	Q5T6C5	722 aa	Predicted RBP	11.22	□□□□□ -0.61
APTX-209	ENST00000460940	MARC1	Q5VT66	337 aa		11.22	□□□□□ -0.61
APTX-209	ENST00000460940	SLC35F6	Q8N357	371 aa		11.22	□□□□□ -0.61
APTX-209	ENST00000460940	HDDC3	Q8N4P3	179 aa		11.22	□□□□□ -0.61
APTX-209	ENST00000460940	NOA1	Q8NC60	698 aa	Known RBP	11.22	□□□□□ -0.61
APTX-209	ENST00000460940	MAML1	Q92585	1016 aa		11.22	□□□□□ -0.61
APTX-209	ENST00000460940	FAM122A	Q96E09	287 aa		11.22	□□□□□ -0.61
APTX-209	ENST00000460940	TUBGCP5	Q96RT8	1024 aa		11.22	□□□□□ -0.61
APTX-209	ENST00000460940	HDAC8	Q9BY41	377 aa		11.22	□□□□□ -0.61
APTX-209	ENST00000460940	CPEB1	Q9BZB8	566 aa	Known RBP	11.22	□□□□□ -0.61
APTX-209	ENST00000460940	OSBPL8	Q9BZF1	889 aa		11.22	□□□□□ -0.61
APTX-209	ENST00000460940	GMEB2	Q9UKD1	530 aa		11.22	□□□□□ -0.61
APTX-209	ENST00000460940	SARDH	Q9UL12	918 aa		11.22	□□□□□ -0.61
APTX-209	ENST00000460940	TPX2	Q9ULW0	747 aa	Known RBP	11.22	□□□□□ -0.61
APTX-209	ENST00000460940	PCDHGA5	Q9Y5G8	931 aa		11.22	□□□□□ -0.61
APTX-209	ENST00000460940	SPAG17	Q6Q759	2223 aa		11.22	□□□□□ -0.61
APTX-209	ENST00000460940	APOC4-APOC2	K7ER74	178 aa		11.21	□□□□□ -0.61
APTX-209	ENST00000460940	KRIT1	O00522	736 aa		11.21	□□□□□ -0.61
APTX-209	ENST00000460940	DDX3Y	O15523	660 aa	Known RBP	11.21	□□□□□ -0.61
APTX-209	ENST00000460940	EPN2	O95208	641 aa		11.21	□□□□□ -0.61
APTX-209	ENST00000460940	SEMA4F	O95754	770 aa		11.21	□□□□□ -0.61
APTX-209	ENST00000460940	APOC2	P02655	101 aa		11.21	□□□□□ -0.61
APTX-209	ENST00000460940	RET	P07949	1114 aa		11.21	□□□□□ -0.61
APTX-209	ENST00000460940	KRT10	P13645	584 aa		11.21	□□□□□ -0.61
APTX-209	ENST00000460940	PAX7	P23759	505 aa		11.21	□□□□□ -0.61
APTX-209	ENST00000460940	DRD3	P35462	400 aa		11.21	□□□□□ -0.61
APTX-209	ENST00000460940	MMP13	P45452	471 aa		11.21	□□□□□ -0.61
APTX-209	ENST00000460940	GNGT1	P63211	74 aa		11.21	□□□□□ -0.61
APTX-209	ENST00000460940	ADCY2	Q08462	1091 aa		11.21	□□□□□ -0.61
APTX-209	ENST00000460940	SLC10A7	Q0GE19	358 aa		11.21	□□□□□ -0.61
APTX-209	ENST00000460940	SLC10A2	Q12908	348 aa	Predicted RBP	11.21	□□□□□ -0.61
APTX-209	ENST00000460940	CEP85L	Q5SZL2	805 aa		11.21	□□□□□ -0.61
APTX-209	ENST00000460940	KAZN	Q674X7	775 aa		11.21	□□□□□ -0.61
APTX-209	ENST00000460940	TLDC1	Q6P9B6	456 aa		11.21	□□□□□ -0.61
APTX-209	ENST00000460940	CCDC13	Q8IYE1	715 aa		11.21	□□□□□ -0.61
APTX-209	ENST00000460940	TEX26	Q8N6G2	289 aa		11.21	□□□□□ -0.61
APTX-209	ENST00000460940	TSEN2	Q8NCE0	465 aa	Known RBP	11.21	□□□□□ -0.61
APTX-209	ENST00000460940	CCNY	Q8ND76	341 aa		11.21	□□□□□ -0.61
APTX-209	ENST00000460940	ITFG2	Q969R8	447 aa		11.21	□□□□□ -0.61
APTX-209	ENST00000460940	SH3GL3	Q99963	347 aa		11.21	□□□□□ -0.61
APTX-209	ENST00000460940	MGME1	Q9BQP7	344 aa		11.21	□□□□□ -0.61
APTX-209	ENST00000460940	KDM4C	Q9H3R0	1056 aa		11.21	□□□□□ -0.61
APTX-209	ENST00000460940	ACTR5	Q9H9F9	607 aa	Predicted RBP	11.21	□□□□□ -0.61
APTX-209	ENST00000460940	SERGEF	Q9UGK8	458 aa		11.21	□□□□□ -0.61
APTX-209	ENST00000460940	RIF1	Q5UIP0	2472 aa	Known RBP	11.21	□□□□□ -0.61
APTX-209	ENST00000460940	DMD	P11532	3685 aa		11.21	□□□□□ -0.62
APTX-209	ENST00000460940	GOLGA6B	A6NDN3	693 aa		11.21	□□□□□ -0.62
APTX-209	ENST00000460940	LRRC72	A6NJI9	287 aa		11.21	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 40 ms