RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 ZNF284Q2VY69 593 aa17.55■□□□□ 0.4
USP39-208ENST00000455732 TMEM259Q4ZIN3 620 aa17.55■□□□□ 0.4
USP39-208ENST00000455732 KIAA1161Q6NSJ0 714 aa17.55■□□□□ 0.4
USP39-208ENST00000455732 ADAT2Q7Z6V5 191 aaKnown RBP17.55■□□□□ 0.4
USP39-208ENST00000455732 NAXDQ8IW45 347 aa17.55■□□□□ 0.4
USP39-208ENST00000455732 RAPGEF5Q92565 580 aa17.55■□□□□ 0.4
USP39-208ENST00000455732 SERAC1Q96JX3 654 aa17.55■□□□□ 0.4
USP39-208ENST00000455732 EXOC2Q96KP1 924 aa17.55■□□□□ 0.4
USP39-208ENST00000455732 CALR3Q96L12 384 aaKnown RBP17.55■□□□□ 0.4
USP39-208ENST00000455732 KLHL32Q96NJ5 620 aa17.55■□□□□ 0.4
USP39-208ENST00000455732 TUBGCP5Q96RT8 1024 aa17.55■□□□□ 0.4
USP39-208ENST00000455732 PCDHGB2Q9Y5G2 931 aa17.55■□□□□ 0.4
USP39-208ENST00000455732 AKAP13Q12802 2813 aa17.55■□□□□ 0.4
USP39-208ENST00000455732 FRYQ5TBA9 3013 aa17.55■□□□□ 0.4
USP39-208ENST00000455732 TDRD6O60522 2096 aaKnown RBP17.54■□□□□ 0.4
USP39-208ENST00000455732 SPAARA0A1B0GVQ0 90 aa17.54■□□□□ 0.4
USP39-208ENST00000455732 A0A1W2PQU0 124 aa17.54■□□□□ 0.4
USP39-208ENST00000455732 KCNK3O14649 394 aa17.54■□□□□ 0.4
USP39-208ENST00000455732 AREL1O15033 823 aa17.54■□□□□ 0.4
USP39-208ENST00000455732 INSIG1O15503 277 aa17.54■□□□□ 0.4
USP39-208ENST00000455732 KDELR1P24390 212 aa17.54■□□□□ 0.4
USP39-208ENST00000455732 MAT2AP31153 395 aaKnown RBP17.54■□□□□ 0.4
USP39-208ENST00000455732 ABL2P42684 1182 aa17.54■□□□□ 0.4
USP39-208ENST00000455732 RGRP47804 291 aa17.54■□□□□ 0.4
USP39-208ENST00000455732 RENBPP51606 427 aa17.54■□□□□ 0.4
USP39-208ENST00000455732 SUOXP51687 545 aa17.54■□□□□ 0.4
USP39-208ENST00000455732 SIM1P81133 766 aaPredicted RBP17.54■□□□□ 0.4
USP39-208ENST00000455732 GALNT2Q10471 571 aa17.54■□□□□ 0.4
USP39-208ENST00000455732 LBRQ14739 615 aaKnown RBP17.54■□□□□ 0.4
USP39-208ENST00000455732 RAD9BQ6WBX8 426 aa17.54■□□□□ 0.4
USP39-208ENST00000455732 TMEM139Q8IV31 216 aa17.54■□□□□ 0.4
USP39-208ENST00000455732 RHOT1Q8IXI2 618 aa17.54■□□□□ 0.4
USP39-208ENST00000455732 PQLC3Q8N755 202 aa17.54■□□□□ 0.4
USP39-208ENST00000455732 TSEN2Q8NCE0 465 aaKnown RBP17.54■□□□□ 0.4
USP39-208ENST00000455732 SKA1Q96BD8 255 aa17.54■□□□□ 0.4
USP39-208ENST00000455732 ZNF641Q96N77 438 aaPredicted RBP17.54■□□□□ 0.4
USP39-208ENST00000455732 BAG1Q99933 345 aaPredicted RBP17.54■□□□□ 0.4
USP39-208ENST00000455732 ZFR2Q9UPR6 939 aaKnown RBP17.54■□□□□ 0.4
USP39-208ENST00000455732 CFAP47Q6ZTR5 3102 aa17.54■□□□□ 0.4
USP39-208ENST00000455732 SPEGQ15772 3267 aa17.54■□□□□ 0.4
USP39-208ENST00000455732 C3orf70A6NLC5 250 aaPredicted RBP17.53■□□□□ 0.4
USP39-208ENST00000455732 BTNL10A8MVZ5 291 aa17.53■□□□□ 0.4
USP39-208ENST00000455732 PRAMEF26H0Y7S4 382 aa17.53■□□□□ 0.4
USP39-208ENST00000455732 H0Y8X5 98 aa17.53■□□□□ 0.4
USP39-208ENST00000455732 SPINT1O43278 529 aa17.53■□□□□ 0.4
USP39-208ENST00000455732 PSTPIP1O43586 416 aa17.53■□□□□ 0.4
USP39-208ENST00000455732 TSPAN6O43657 245 aa17.53■□□□□ 0.4
USP39-208ENST00000455732 SPOPO43791 374 aa17.53■□□□□ 0.4
USP39-208ENST00000455732 BUB1BO60566 1050 aaPredicted RBP17.53■□□□□ 0.4
USP39-208ENST00000455732 COMTP21964 271 aa17.53■□□□□ 0.4
USP39-208ENST00000455732 GARSP41250 739 aaKnown RBP17.53■□□□□ 0.4
USP39-208ENST00000455732 NOP2P46087 812 aaKnown RBP17.53■□□□□ 0.4
USP39-208ENST00000455732 C21orf59P57076 290 aa17.53■□□□□ 0.4
USP39-208ENST00000455732 RPS21P63220 83 aaKnown RBP17.53■□□□□ 0.4
USP39-208ENST00000455732 SLC10A7Q0GE19 358 aa17.53■□□□□ 0.4
USP39-208ENST00000455732 OVGP1Q12889 678 aa17.53■□□□□ 0.4
USP39-208ENST00000455732 C11orf63Q6NUN7 778 aa17.53■□□□□ 0.4
USP39-208ENST00000455732 SRLQ86TD4 932 aa17.53■□□□□ 0.4
USP39-208ENST00000455732 IQCHQ86VS3 1027 aa17.53■□□□□ 0.4
USP39-208ENST00000455732 TMEM145Q8NBT3 493 aa17.53■□□□□ 0.4
USP39-208ENST00000455732 BAHD1Q8TBE0 780 aaPredicted RBP17.53■□□□□ 0.4
USP39-208ENST00000455732 FATE1Q969F0 183 aa17.53■□□□□ 0.4
USP39-208ENST00000455732 RNF157Q96PX1 679 aa17.53■□□□□ 0.4
USP39-208ENST00000455732 AASDHPPTQ9NRN7 309 aa17.53■□□□□ 0.4
USP39-208ENST00000455732 DDX56Q9NY93 547 aaKnown RBP17.53■□□□□ 0.4
USP39-208ENST00000455732 PCOLCE2Q9UKZ9 415 aa17.53■□□□□ 0.4
USP39-208ENST00000455732 REXO2Q9Y3B8 237 aaKnown RBP17.53■□□□□ 0.4
USP39-208ENST00000455732 LRRK1Q38SD2 2015 aa17.53■□□□□ 0.4
USP39-208ENST00000455732 PTPRBP23467 1997 aa17.53■□□□□ 0.4
USP39-208ENST00000455732 LRRD1A4D1F6 860 aa17.52■□□□□ 0.4
USP39-208ENST00000455732 MUSKO15146 869 aa17.52■□□□□ 0.4
USP39-208ENST00000455732 PCDHGA12O60330 932 aa17.52■□□□□ 0.4
USP39-208ENST00000455732 DFNA5O60443 496 aa17.52■□□□□ 0.4
USP39-208ENST00000455732 PCDH8O95206 1070 aa17.52■□□□□ 0.4
USP39-208ENST00000455732 PIGNO95427 931 aa17.52■□□□□ 0.4
USP39-208ENST00000455732 AP1S1P61966 158 aa17.52■□□□□ 0.4
USP39-208ENST00000455732 ZNF235Q14590 738 aa17.52■□□□□ 0.4
USP39-208ENST00000455732 TRIP6Q15654 476 aaKnown RBP17.52■□□□□ 0.4
USP39-208ENST00000455732 SLC45A4Q5BKX6 768 aa17.52■□□□□ 0.4
USP39-208ENST00000455732 ZFYVE27Q5T4F4 411 aa17.52■□□□□ 0.4
USP39-208ENST00000455732 SLC9A4Q6AI14 798 aa17.52■□□□□ 0.4
USP39-208ENST00000455732 BRAT1Q6PJG6 821 aa17.52■□□□□ 0.4
USP39-208ENST00000455732 BBS5Q8N3I7 341 aa17.52■□□□□ 0.4
USP39-208ENST00000455732 TEX26Q8N6G2 289 aa17.52■□□□□ 0.4
USP39-208ENST00000455732 MFSD2AQ8NA29 543 aa17.52■□□□□ 0.4
USP39-208ENST00000455732 NSMCE1Q8WV22 266 aa17.52■□□□□ 0.4
USP39-208ENST00000455732 ASB12Q8WXK4 309 aa17.52■□□□□ 0.4
USP39-208ENST00000455732 FEM1CQ96JP0 617 aa17.52■□□□□ 0.4
USP39-208ENST00000455732 TSGA13Q96PP4 275 aa17.52■□□□□ 0.4
USP39-208ENST00000455732 MGME1Q9BQP7 344 aa17.52■□□□□ 0.4
USP39-208ENST00000455732 SUV39H2Q9H5I1 410 aa17.52■□□□□ 0.4
USP39-208ENST00000455732 ATP13A3Q9H7F0 1226 aa17.52■□□□□ 0.4
USP39-208ENST00000455732 ALG6Q9Y672 507 aa17.52■□□□□ 0.4
USP39-208ENST00000455732 COL5A1P20908 1838 aaPredicted RBP17.51■□□□□ 0.39
USP39-208ENST00000455732 SHROOM3Q8TF72 1996 aa17.51■□□□□ 0.39
USP39-208ENST00000455732 A0A1B0GTQ1 180 aa17.51■□□□□ 0.39
USP39-208ENST00000455732 RCCD1A6NED2 376 aa17.51■□□□□ 0.39
USP39-208ENST00000455732 GOLGA6L6A8MZA4 724 aa17.51■□□□□ 0.39
USP39-208ENST00000455732 TLR4O00206 839 aa17.51■□□□□ 0.39
USP39-208ENST00000455732 FLRT2O43155 660 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms