RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 MEI4A8MW99 385 aa28.28■■■□□ 2.12
SMARCC1-203ENST00000454240 TBC1D3LB9A6J9 549 aa28.28■■■□□ 2.12
SMARCC1-203ENST00000454240 LRP3O75074 770 aa28.28■■■□□ 2.12
SMARCC1-203ENST00000454240 IGHV4-34P06331 123 aa28.28■■■□□ 2.12
SMARCC1-203ENST00000454240 TBC1D3HP0C7X1 549 aa28.28■■■□□ 2.12
SMARCC1-203ENST00000454240 SERPINA4P29622 427 aa28.28■■■□□ 2.12
SMARCC1-203ENST00000454240 MPLP40238 635 aa28.28■■■□□ 2.12
SMARCC1-203ENST00000454240 DPP6P42658 865 aa28.28■■■□□ 2.12
SMARCC1-203ENST00000454240 CCR5P51681 352 aa28.28■■■□□ 2.12
SMARCC1-203ENST00000454240 BCL2L1Q07817 233 aa28.28■■■□□ 2.12
SMARCC1-203ENST00000454240 ZBTB17Q13105 803 aa28.28■■■□□ 2.12
SMARCC1-203ENST00000454240 NOMO1Q15155 1222 aa28.28■■■□□ 2.12
SMARCC1-203ENST00000454240 WDR45BQ5MNZ6 344 aa28.28■■■□□ 2.12
SMARCC1-203ENST00000454240 TBC1D3GQ6DHY5 549 aa28.28■■■□□ 2.12
SMARCC1-203ENST00000454240 TBC1D3CQ6IPX1 549 aa28.28■■■□□ 2.12
SMARCC1-203ENST00000454240 B4GALNT4Q76KP1 1039 aa28.28■■■□□ 2.12
SMARCC1-203ENST00000454240 TBC1D3Q8IZP1 549 aaPredicted RBP28.28■■■□□ 2.12
SMARCC1-203ENST00000454240 TFB1MQ8WVM0 346 aaKnown RBP28.28■■■□□ 2.12
SMARCC1-203ENST00000454240 PIGKQ92643 395 aa28.28■■■□□ 2.12
SMARCC1-203ENST00000454240 RAB7BQ96AH8 199 aa28.28■■■□□ 2.12
SMARCC1-203ENST00000454240 POLR1EQ9GZS1 481 aaKnown RBP28.28■■■□□ 2.12
SMARCC1-203ENST00000454240 NOD2Q9HC29 1040 aa28.28■■■□□ 2.12
SMARCC1-203ENST00000454240 HAUS2Q9NVX0 235 aa28.28■■■□□ 2.12
SMARCC1-203ENST00000454240 FADS3Q9Y5Q0 445 aa28.28■■■□□ 2.12
SMARCC1-203ENST00000454240 WDR87Q6ZQQ6 2873 aa28.28■■■□□ 2.12
SMARCC1-203ENST00000454240 TRAFD1O14545 582 aaPredicted RBP28.27■■■□□ 2.12
SMARCC1-203ENST00000454240 AP1G1O43747 822 aa28.27■■■□□ 2.12
SMARCC1-203ENST00000454240 HLA-DQB2P05538 268 aa28.27■■■□□ 2.12
SMARCC1-203ENST00000454240 TGM1P22735 817 aa28.27■■■□□ 2.12
SMARCC1-203ENST00000454240 MAOBP27338 520 aa28.27■■■□□ 2.12
SMARCC1-203ENST00000454240 XRCC4Q13426 336 aa28.27■■■□□ 2.12
SMARCC1-203ENST00000454240 CCDC181Q5TID7 509 aa28.27■■■□□ 2.12
SMARCC1-203ENST00000454240 NEK5Q6P3R8 708 aa28.27■■■□□ 2.12
SMARCC1-203ENST00000454240 ALYREFQ86V81 257 aaKnown RBP28.27■■■□□ 2.12
SMARCC1-203ENST00000454240 ZC3H18Q86VM9 953 aaKnown RBP28.27■■■□□ 2.12
SMARCC1-203ENST00000454240 RGL4Q8IZJ4 473 aa28.27■■■□□ 2.12
SMARCC1-203ENST00000454240 CNTD1Q8N815 330 aa28.27■■■□□ 2.12
SMARCC1-203ENST00000454240 ECHDC3Q96DC8 303 aa28.27■■■□□ 2.12
SMARCC1-203ENST00000454240 TLR10Q9BXR5 811 aa28.27■■■□□ 2.12
SMARCC1-203ENST00000454240 TRMT1Q9NXH9 659 aaKnown RBP28.27■■■□□ 2.12
SMARCC1-203ENST00000454240 PLXNA2O75051 1894 aa28.26■■■□□ 2.11
SMARCC1-203ENST00000454240 HACD1B0YJ81 288 aa28.26■■■□□ 2.11
SMARCC1-203ENST00000454240 FSBPO95073 299 aa28.26■■■□□ 2.11
SMARCC1-203ENST00000454240 TIMP2P16035 220 aa28.26■■■□□ 2.11
SMARCC1-203ENST00000454240 CES1P23141 567 aa28.26■■■□□ 2.11
SMARCC1-203ENST00000454240 HOXD12P35452 270 aa28.26■■■□□ 2.11
SMARCC1-203ENST00000454240 ABL2P42684 1182 aa28.26■■■□□ 2.11
SMARCC1-203ENST00000454240 OTUD4Q01804 1114 aaKnown RBP28.26■■■□□ 2.11
SMARCC1-203ENST00000454240 ITKQ08881 620 aa28.26■■■□□ 2.11
SMARCC1-203ENST00000454240 SPEM2Q0P670 501 aa28.26■■■□□ 2.11
SMARCC1-203ENST00000454240 KLF1Q13351 362 aaPredicted RBP28.26■■■□□ 2.11
SMARCC1-203ENST00000454240 BRAT1Q6PJG6 821 aa28.26■■■□□ 2.11
SMARCC1-203ENST00000454240 TTC7BQ86TV6 843 aa28.26■■■□□ 2.11
SMARCC1-203ENST00000454240 ACTL9Q8TC94 416 aa28.26■■■□□ 2.11
SMARCC1-203ENST00000454240 SEMA3CQ99985 751 aa28.26■■■□□ 2.11
SMARCC1-203ENST00000454240 HINFPQ9BQA5 517 aa28.26■■■□□ 2.11
SMARCC1-203ENST00000454240 ORAI3Q9BRQ5 295 aa28.26■■■□□ 2.11
SMARCC1-203ENST00000454240 CARD9Q9H257 536 aa28.26■■■□□ 2.11
SMARCC1-203ENST00000454240 PARD6AQ9NPB6 346 aa28.26■■■□□ 2.11
SMARCC1-203ENST00000454240 TPX2Q9ULW0 747 aaKnown RBP28.26■■■□□ 2.11
SMARCC1-203ENST00000454240 PYCARDQ9ULZ3 195 aa28.26■■■□□ 2.11
SMARCC1-203ENST00000454240 TRPM6Q9BX84 2022 aa28.26■■■□□ 2.11
SMARCC1-203ENST00000454240 RIF1Q5UIP0 2472 aaKnown RBP28.26■■■□□ 2.11
SMARCC1-203ENST00000454240 ATXN2Q99700 1313 aaKnown RBP28.25■■■□□ 2.11
SMARCC1-203ENST00000454240 HTRA2O43464 458 aaPredicted RBP28.25■■■□□ 2.11
SMARCC1-203ENST00000454240 LATO43561 262 aa28.25■■■□□ 2.11
SMARCC1-203ENST00000454240 NEBLO76041 1014 aa28.25■■■□□ 2.11
SMARCC1-203ENST00000454240 PPP2CBP62714 309 aa28.25■■■□□ 2.11
SMARCC1-203ENST00000454240 PPP2CAP67775 309 aa28.25■■■□□ 2.11
SMARCC1-203ENST00000454240 CCDC6Q16204 474 aa28.25■■■□□ 2.11
SMARCC1-203ENST00000454240 TRIM69Q86WT6 500 aa28.25■■■□□ 2.11
SMARCC1-203ENST00000454240 ZSWIM9Q86XI8 627 aa28.25■■■□□ 2.11
SMARCC1-203ENST00000454240 C1orf216Q8TAB5 229 aa28.25■■■□□ 2.11
SMARCC1-203ENST00000454240 ARRDC2Q8TBH0 407 aa28.25■■■□□ 2.11
SMARCC1-203ENST00000454240 QKIQ96PU8 341 aaKnown RBP eCLIP28.25■■■□□ 2.112e-11■■■□□ 17.3
SMARCC1-203ENST00000454240 VPS45Q9NRW7 570 aa28.25■■■□□ 2.11
SMARCC1-203ENST00000454240 EIF2B4Q9UI10 523 aaKnown RBP28.25■■■□□ 2.11
SMARCC1-203ENST00000454240 PCDHGC4Q9Y5F7 938 aa28.25■■■□□ 2.11
SMARCC1-203ENST00000454240 FAM186AA6NE01 2351 aa28.24■■■□□ 2.11
SMARCC1-203ENST00000454240 AREL1O15033 823 aa28.24■■■□□ 2.11
SMARCC1-203ENST00000454240 SPINT1O43278 529 aa28.24■■■□□ 2.11
SMARCC1-203ENST00000454240 SOCS5O75159 536 aa28.24■■■□□ 2.11
SMARCC1-203ENST00000454240 ZNF806P0C7X5 589 aa28.24■■■□□ 2.11
SMARCC1-203ENST00000454240 CD27P26842 260 aa28.24■■■□□ 2.11
SMARCC1-203ENST00000454240 SUOXP51687 545 aa28.24■■■□□ 2.11
SMARCC1-203ENST00000454240 DSC2Q02487 901 aa28.24■■■□□ 2.11
SMARCC1-203ENST00000454240 IHHQ14623 411 aa28.24■■■□□ 2.11
SMARCC1-203ENST00000454240 UGP2Q16851 508 aa28.24■■■□□ 2.11
SMARCC1-203ENST00000454240 TEX44Q53QW1 395 aa28.24■■■□□ 2.11
SMARCC1-203ENST00000454240 SLC45A4Q5BKX6 768 aa28.24■■■□□ 2.11
SMARCC1-203ENST00000454240 SPOCK2Q92563 424 aa28.24■■■□□ 2.11
SMARCC1-203ENST00000454240 EBF2Q9HAK2 575 aa28.24■■■□□ 2.11
SMARCC1-203ENST00000454240 SEMA4GQ9NTN9 838 aa28.24■■■□□ 2.11
SMARCC1-203ENST00000454240 EP300Q09472 2414 aaPredicted RBP28.24■■■□□ 2.11
SMARCC1-203ENST00000454240 GOLGA6L9A6NEM1 432 aa28.23■■■□□ 2.11
SMARCC1-203ENST00000454240 MTSS1O43312 755 aa28.23■■■□□ 2.11
SMARCC1-203ENST00000454240 RNGTTO60942 597 aaKnown RBP28.23■■■□□ 2.11
SMARCC1-203ENST00000454240 PTPN3P26045 913 aa28.23■■■□□ 2.11
SMARCC1-203ENST00000454240 NIPAL4Q0D2K0 466 aa28.23■■■□□ 2.11
SMARCC1-203ENST00000454240 WASHC5Q12768 1159 aa28.23■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms