RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 YWHAQP27348 245 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 CD86P42081 329 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 TUBB3Q13509 450 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 NFYCQ13952 458 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 SAMD4BQ5PRF9 694 aaKnown RBP11.97□□□□□ -0.49
MSH6-204ENST00000445503 RBM20Q5T481 1227 aaKnown RBP11.97□□□□□ -0.49
MSH6-204ENST00000445503 SDCCAG3Q96C92 435 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 NPY6RQ99463 290 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 SLC25A23Q9BV35 468 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 GLOD4Q9HC38 313 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 RGS18Q9NS28 235 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 ZBBXA8MT70 800 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 RNASEH2AO75792 299 aaKnown RBP11.97□□□□□ -0.49
MSH6-204ENST00000445503 CHRM1P11229 460 aaPredicted RBP11.97□□□□□ -0.49
MSH6-204ENST00000445503 SMPD1P17405 629 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 PSMA4P25789 261 aaKnown RBP11.97□□□□□ -0.49
MSH6-204ENST00000445503 MAGEA3P43357 314 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 WNT3AP56704 352 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 DAOAP59103 153 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 FOXD4Q12950 439 aaPredicted RBP11.97□□□□□ -0.49
MSH6-204ENST00000445503 ZNF235Q14590 738 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 C6orf10Q5SRN2 563 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 ADGRG6Q86SQ4 1221 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 TAC4Q86UU9 113 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 SHCBP1Q8NEM2 672 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 HDAC10Q969S8 669 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 FBRSL1Q9HCM7 1045 aaKnown RBP11.97□□□□□ -0.49
MSH6-204ENST00000445503 PREBQ9HCU5 417 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 TRAF6Q9Y4K3 522 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 ZCWPW2A0A1B0GU75 182 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 SNX2O60749 519 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 LTA4HP09960 611 aaKnown RBP11.97□□□□□ -0.49
MSH6-204ENST00000445503 PRKAA2P54646 552 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 CDC42EP1Q00587 391 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 SNX17Q15036 470 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 CYP51A1Q16850 503 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 GPR158Q5T848 1215 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 SPPL2CQ8IUH8 684 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 TRPC4APQ8TEL6 797 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 KBTBD7Q8WVZ9 684 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 FAR2Q96K12 515 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 CCDC28BQ9BUN5 200 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 FBXW11Q9UKB1 542 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 RAB26Q9ULW5 256 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 FAM50BQ9Y247 325 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 ANKRD31Q8N7Z5 1873 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 SOCS7O14512 581 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 NRP2O60462 931 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 RHOBTB1O94844 696 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 MMP3P08254 477 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 PABPC4LP0CB38 370 aaKnown RBP11.97□□□□□ -0.49
MSH6-204ENST00000445503 BRCC3P46736 316 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 LHX1P48742 406 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 MCCD1P59942 119 aaPredicted RBP11.97□□□□□ -0.49
MSH6-204ENST00000445503 VPS26BQ4G0F5 336 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 CLEC4FQ8N1N0 589 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 EFHBQ8N7U6 833 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 PTGR2Q8N8N7 351 aaPredicted RBP11.97□□□□□ -0.49
MSH6-204ENST00000445503 RDH11Q8TC12 318 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 MYLPFQ96A32 169 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 FCRL2Q96LA5 508 aaPredicted RBP11.97□□□□□ -0.49
MSH6-204ENST00000445503 TRIM8Q9BZR9 551 aa11.97□□□□□ -0.49
MSH6-204ENST00000445503 SEMA4BQ9NPR2 832 aaPredicted RBP11.97□□□□□ -0.49
MSH6-204ENST00000445503 PDLIM1O00151 329 aa11.96□□□□□ -0.49
MSH6-204ENST00000445503 CLOCKO15516 846 aa11.96□□□□□ -0.49
MSH6-204ENST00000445503 C1QAP02745 245 aa11.96□□□□□ -0.49
MSH6-204ENST00000445503 HOXA11P31270 313 aaPredicted RBP11.96□□□□□ -0.49
MSH6-204ENST00000445503 TRIM25Q14258 630 aaKnown RBP11.96□□□□□ -0.49
MSH6-204ENST00000445503 MFSD10Q14728 455 aa11.96□□□□□ -0.49
MSH6-204ENST00000445503 ZIK1Q3SY52 487 aaPredicted RBP11.96□□□□□ -0.49
MSH6-204ENST00000445503 KCTD21Q4G0X4 260 aa11.96□□□□□ -0.49
MSH6-204ENST00000445503 REP15Q6BDI9 236 aa11.96□□□□□ -0.49
MSH6-204ENST00000445503 PGM2L1Q6PCE3 622 aa11.96□□□□□ -0.49
MSH6-204ENST00000445503 RNF111Q6ZNA4 994 aa11.96□□□□□ -0.49
MSH6-204ENST00000445503 CEP97Q8IW35 865 aa11.96□□□□□ -0.49
MSH6-204ENST00000445503 GPC2Q8N158 579 aa11.96□□□□□ -0.49
MSH6-204ENST00000445503 DCBLD1Q8N8Z6 715 aa11.96□□□□□ -0.49
MSH6-204ENST00000445503 CCDC126Q96EE4 140 aa11.96□□□□□ -0.49
MSH6-204ENST00000445503 SMARCD1Q96GM5 515 aa11.96□□□□□ -0.49
MSH6-204ENST00000445503 CASS4Q9NQ75 786 aa11.96□□□□□ -0.49
MSH6-204ENST00000445503 ADARB2Q9NS39 739 aaKnown RBP11.96□□□□□ -0.49
MSH6-204ENST00000445503 OR51F1A6NGY5 319 aa11.96□□□□□ -0.5
MSH6-204ENST00000445503 TRMUO75648 421 aaKnown RBP11.96□□□□□ -0.5
MSH6-204ENST00000445503 LINC00032P0C843 101 aa11.96□□□□□ -0.5
MSH6-204ENST00000445503 DCTN2Q13561 401 aaKnown RBP11.96□□□□□ -0.5
MSH6-204ENST00000445503 PAFAH1B3Q15102 231 aaKnown RBP11.96□□□□□ -0.5
MSH6-204ENST00000445503 MARC1Q5VT66 337 aa11.96□□□□□ -0.5
MSH6-204ENST00000445503 TMEM135Q86UB9 458 aa11.96□□□□□ -0.5
MSH6-204ENST00000445503 SCAMP5Q8TAC9 235 aa11.96□□□□□ -0.5
MSH6-204ENST00000445503 PAIP1Q9H074 479 aaKnown RBP11.96□□□□□ -0.5
MSH6-204ENST00000445503 BRD8Q9H0E9 1235 aa11.96□□□□□ -0.5
MSH6-204ENST00000445503 SLC38A7Q9NVC3 462 aa11.96□□□□□ -0.5
MSH6-204ENST00000445503 DERAQ9Y315 318 aa11.96□□□□□ -0.5
MSH6-204ENST00000445503 NME7Q9Y5B8 376 aa11.96□□□□□ -0.5
MSH6-204ENST00000445503 LOXHD1Q8IVV2 1947 aa11.96□□□□□ -0.5
MSH6-204ENST00000445503 NFKBIAP25963 317 aa11.96□□□□□ -0.5
MSH6-204ENST00000445503 MAP4P27816 1152 aaKnown RBP11.96□□□□□ -0.5
MSH6-204ENST00000445503 CLCNKBP51801 687 aa11.96□□□□□ -0.5
MSH6-204ENST00000445503 KCNK10P57789 538 aa11.96□□□□□ -0.5
MSH6-204ENST00000445503 EFEMP1Q12805 493 aa11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms