RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 PSMD8P48556 350 aa15.94■□□□□ 0.14
USP40-206ENST00000443711 VPS41P49754 854 aa15.94■□□□□ 0.14
USP40-206ENST00000443711 ZBTB16Q05516 673 aa15.94■□□□□ 0.14
USP40-206ENST00000443711 SFSWAPQ12872 951 aaKnown RBP15.94■□□□□ 0.14
USP40-206ENST00000443711 GPS1Q13098 491 aa15.94■□□□□ 0.14
USP40-206ENST00000443711 MPP3Q13368 585 aa15.94■□□□□ 0.14
USP40-206ENST00000443711 ZNF805Q5CZA5 627 aa15.94■□□□□ 0.14
USP40-206ENST00000443711 CFAP58Q5T655 872 aa15.94■□□□□ 0.14
USP40-206ENST00000443711 TAB3Q8N5C8 712 aaPredicted RBP15.94■□□□□ 0.14
USP40-206ENST00000443711 CAMKK1Q8N5S9 505 aa15.94■□□□□ 0.14
USP40-206ENST00000443711 PAF1Q8N7H5 531 aa15.94■□□□□ 0.14
USP40-206ENST00000443711 TMEM105Q8N8V8 129 aa15.94■□□□□ 0.14
USP40-206ENST00000443711 HCAR2Q8TDS4 363 aa15.94■□□□□ 0.14
USP40-206ENST00000443711 LRRC45Q96CN5 670 aa15.94■□□□□ 0.14
USP40-206ENST00000443711 SIPA1Q96FS4 1042 aa15.94■□□□□ 0.14
USP40-206ENST00000443711 OXNAD1Q96HP4 312 aaPredicted RBP15.94■□□□□ 0.14
USP40-206ENST00000443711 PPP1R16AQ96I34 528 aa15.94■□□□□ 0.14
USP40-206ENST00000443711 NSMCE3Q96MG7 304 aa15.94■□□□□ 0.14
USP40-206ENST00000443711 KLHL32Q96NJ5 620 aa15.94■□□□□ 0.14
USP40-206ENST00000443711 MKRN2Q9H000 416 aaKnown RBP15.94■□□□□ 0.14
USP40-206ENST00000443711 ETNK1Q9HBU6 452 aa15.94■□□□□ 0.14
USP40-206ENST00000443711 DYRK4Q9NR20 520 aa15.94■□□□□ 0.14
USP40-206ENST00000443711 UBP1Q9NZI7 540 aa15.94■□□□□ 0.14
USP40-206ENST00000443711 ASIC3Q9UHC3 531 aa15.94■□□□□ 0.14
USP40-206ENST00000443711 SARDHQ9UL12 918 aa15.94■□□□□ 0.14
USP40-206ENST00000443711 SCML1Q9UN30 329 aa15.94■□□□□ 0.14
USP40-206ENST00000443711 RAI2Q9Y5P3 530 aa15.94■□□□□ 0.14
USP40-206ENST00000443711 ZDBF2Q9HCK1 2354 aa15.94■□□□□ 0.14
USP40-206ENST00000443711 CACNA1IQ9P0X4 2223 aa15.93■□□□□ 0.14
USP40-206ENST00000443711 E7EVH7 732 aa15.93■□□□□ 0.14
USP40-206ENST00000443711 HTRA2O43464 458 aaPredicted RBP15.93■□□□□ 0.14
USP40-206ENST00000443711 RAD51CO43502 376 aa15.93■□□□□ 0.14
USP40-206ENST00000443711 PMPCBO75439 489 aa15.93■□□□□ 0.14
USP40-206ENST00000443711 APBB3O95704 486 aa15.93■□□□□ 0.14
USP40-206ENST00000443711 GABRG2P18507 467 aa15.93■□□□□ 0.14
USP40-206ENST00000443711 C5AR1P21730 350 aa15.93■□□□□ 0.14
USP40-206ENST00000443711 ADCY8P40145 1251 aa15.93■□□□□ 0.14
USP40-206ENST00000443711 TNNT3P45378 269 aaPredicted RBP15.93■□□□□ 0.14
USP40-206ENST00000443711 TRAF2Q12933 501 aa15.93■□□□□ 0.14
USP40-206ENST00000443711 IHHQ14623 411 aa15.93■□□□□ 0.14
USP40-206ENST00000443711 ARMC12Q5T9G4 340 aa15.93■□□□□ 0.14
USP40-206ENST00000443711 FAXCQ5TGI0 409 aa15.93■□□□□ 0.14
USP40-206ENST00000443711 C8orf74Q6P047 294 aa15.93■□□□□ 0.14
USP40-206ENST00000443711 KDELC1Q6UW63 502 aa15.93■□□□□ 0.14
USP40-206ENST00000443711 KIAA1324Q6UXG2 1013 aaKnown RBP15.93■□□□□ 0.14
USP40-206ENST00000443711 KLHDC8BQ8IXV7 354 aa15.93■□□□□ 0.14
USP40-206ENST00000443711 PGBD3Q8N328 593 aa15.93■□□□□ 0.14
USP40-206ENST00000443711 DTWD2Q8NBA8 298 aa15.93■□□□□ 0.14
USP40-206ENST00000443711 HMGB4Q8WW32 186 aa15.93■□□□□ 0.14
USP40-206ENST00000443711 VOPP1Q96AW1 172 aa15.93■□□□□ 0.14
USP40-206ENST00000443711 MRGPRX1Q96LB2 322 aa15.93■□□□□ 0.14
USP40-206ENST00000443711 HHIPQ96QV1 700 aa15.93■□□□□ 0.14
USP40-206ENST00000443711 MLPHQ9BV36 600 aaPredicted RBP15.93■□□□□ 0.14
USP40-206ENST00000443711 BCCIPQ9P287 314 aaKnown RBP eCLIP15.93■□□□□ 0.14
USP40-206ENST00000443711 DKK3Q9UBP4 350 aa15.93■□□□□ 0.14
USP40-206ENST00000443711 ARIH1Q9Y4X5 557 aaPredicted RBP15.93■□□□□ 0.14
USP40-206ENST00000443711 ERI2A8K979 691 aaKnown RBP15.92■□□□□ 0.14
USP40-206ENST00000443711 TRAFD1O14545 582 aaPredicted RBP15.92■□□□□ 0.14
USP40-206ENST00000443711 MID1O15344 667 aa15.92■□□□□ 0.14
USP40-206ENST00000443711 LAMTOR5O43504 91 aa15.92■□□□□ 0.14
USP40-206ENST00000443711 ACADMP11310 421 aa15.92■□□□□ 0.14
USP40-206ENST00000443711 NDUFV2P19404 249 aa15.92■□□□□ 0.14
USP40-206ENST00000443711 ITGB7P26010 798 aa15.92■□□□□ 0.14
USP40-206ENST00000443711 AVPR2P30518 371 aa15.92■□□□□ 0.14
USP40-206ENST00000443711 LMAN1P49257 510 aa15.92■□□□□ 0.14
USP40-206ENST00000443711 WNT3AP56704 352 aa15.92■□□□□ 0.14
USP40-206ENST00000443711 POLR2LP62875 67 aaKnown RBP15.92■□□□□ 0.14
USP40-206ENST00000443711 BASP1P80723 227 aaKnown RBP15.92■□□□□ 0.14
USP40-206ENST00000443711 CDK18Q07002 472 aa15.92■□□□□ 0.14
USP40-206ENST00000443711 CCDC15Q0P6D6 951 aa15.92■□□□□ 0.14
USP40-206ENST00000443711 SEMA5AQ13591 1074 aa15.92■□□□□ 0.14
USP40-206ENST00000443711 PCSK7Q16549 785 aa15.92■□□□□ 0.14
USP40-206ENST00000443711 TTC31Q49AM3 519 aaPredicted RBP15.92■□□□□ 0.14
USP40-206ENST00000443711 GLE1Q53GS7 698 aaKnown RBP15.92■□□□□ 0.14
USP40-206ENST00000443711 ANO7Q6IWH7 933 aa15.92■□□□□ 0.14
USP40-206ENST00000443711 CCDC70Q6NSX1 233 aa15.92■□□□□ 0.14
USP40-206ENST00000443711 BRAT1Q6PJG6 821 aa15.92■□□□□ 0.14
USP40-206ENST00000443711 IPMKQ8NFU5 416 aa15.92■□□□□ 0.14
USP40-206ENST00000443711 PDCD6IPQ8WUM4 868 aaKnown RBP15.92■□□□□ 0.14
USP40-206ENST00000443711 ARRDC3Q96B67 414 aa15.92■□□□□ 0.14
USP40-206ENST00000443711 ECHDC3Q96DC8 303 aa15.92■□□□□ 0.14
USP40-206ENST00000443711 IFT43Q96FT9 208 aa15.92■□□□□ 0.14
USP40-206ENST00000443711 FEM1CQ96JP0 617 aa15.92■□□□□ 0.14
USP40-206ENST00000443711 GORASP1Q9BQQ3 440 aa15.92■□□□□ 0.14
USP40-206ENST00000443711 TRIM51Q9BSJ1 452 aa15.92■□□□□ 0.14
USP40-206ENST00000443711 LRRC1Q9BTT6 524 aa15.92■□□□□ 0.14
USP40-206ENST00000443711 TDRD1Q9BXT4 1180 aaKnown RBP15.92■□□□□ 0.14
USP40-206ENST00000443711 SLC6A17Q9H1V8 727 aa15.92■□□□□ 0.14
USP40-206ENST00000443711 PABPC3Q9H361 631 aaKnown RBP15.92■□□□□ 0.14
USP40-206ENST00000443711 CHKBQ9Y259 395 aa15.92■□□□□ 0.14
USP40-206ENST00000443711 PCDHB9Q9Y5E1 797 aa15.92■□□□□ 0.14
USP40-206ENST00000443711 TSPAN11A1L157 253 aa15.91■□□□□ 0.14
USP40-206ENST00000443711 FAM86C2PA6NEL3 165 aa15.91■□□□□ 0.14
USP40-206ENST00000443711 C16orf96A6NNT2 1141 aa15.91■□□□□ 0.14
USP40-206ENST00000443711 EFCAB8A8MWE9 144 aa15.91■□□□□ 0.14
USP40-206ENST00000443711 FZD6O60353 706 aa15.91■□□□□ 0.14
USP40-206ENST00000443711 GPR37L1O60883 481 aa15.91■□□□□ 0.14
USP40-206ENST00000443711 PGLSO95336 258 aa15.91■□□□□ 0.14
USP40-206ENST00000443711 EPOP01588 193 aa15.91■□□□□ 0.14
USP40-206ENST00000443711 HOXA6P31267 233 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms