RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 SMARCE1Q969G3 411 aa14.6□□□□□ -0.07
HMGN1-208ENST00000443046 TMEM159Q96B96 161 aa14.6□□□□□ -0.07
HMGN1-208ENST00000443046 ARHGEF26Q96DR7 871 aa14.6□□□□□ -0.07
HMGN1-208ENST00000443046 HAPLN3Q96S86 360 aa14.6□□□□□ -0.07
HMGN1-208ENST00000443046 FUCA2Q9BTY2 467 aa14.6□□□□□ -0.07
HMGN1-208ENST00000443046 SLC25A18Q9H1K4 315 aa14.6□□□□□ -0.07
HMGN1-208ENST00000443046 LRRN3Q9H3W5 708 aa14.6□□□□□ -0.07
HMGN1-208ENST00000443046 SYNDIG1Q9H7V2 258 aa14.6□□□□□ -0.07
HMGN1-208ENST00000443046 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.6□□□□□ -0.07
HMGN1-208ENST00000443046 SEPT10Q9P0V9 454 aa14.6□□□□□ -0.07
HMGN1-208ENST00000443046 GULP1Q9UBP9 304 aa14.6□□□□□ -0.07
HMGN1-208ENST00000443046 PISDQ9UG56 409 aa14.6□□□□□ -0.07
HMGN1-208ENST00000443046 APPL1Q9UKG1 709 aa14.6□□□□□ -0.07
HMGN1-208ENST00000443046 LOXL2Q9Y4K0 774 aa14.6□□□□□ -0.07
HMGN1-208ENST00000443046 PRAMEF33A0A0G2JMD5 474 aa14.59□□□□□ -0.07
HMGN1-208ENST00000443046 PPP1R3GB7ZBB8 358 aa14.59□□□□□ -0.07
HMGN1-208ENST00000443046 NEMP1O14524 444 aa14.59□□□□□ -0.07
HMGN1-208ENST00000443046 PRAMEF10O60809 474 aa14.59□□□□□ -0.07
HMGN1-208ENST00000443046 PPFIA2O75334 1257 aa14.59□□□□□ -0.07
HMGN1-208ENST00000443046 GSRP00390 522 aa14.59□□□□□ -0.07
HMGN1-208ENST00000443046 ALPIP09923 528 aa14.59□□□□□ -0.07
HMGN1-208ENST00000443046 BMP6P22004 513 aa14.59□□□□□ -0.07
HMGN1-208ENST00000443046 PPP1R2P41236 205 aa14.59□□□□□ -0.07
HMGN1-208ENST00000443046 BLKP51451 505 aa14.59□□□□□ -0.07
HMGN1-208ENST00000443046 SNX16P57768 344 aa14.59□□□□□ -0.07
HMGN1-208ENST00000443046 STIM1Q13586 685 aa14.59□□□□□ -0.07
HMGN1-208ENST00000443046 MORC3Q14149 939 aa14.59□□□□□ -0.07
HMGN1-208ENST00000443046 SLC25A52Q3SY17 297 aa14.59□□□□□ -0.07
HMGN1-208ENST00000443046 MANEAQ5SRI9 462 aa14.59□□□□□ -0.07
HMGN1-208ENST00000443046 ZFAND4Q86XD8 727 aa14.59□□□□□ -0.07
HMGN1-208ENST00000443046 GPR156Q8NFN8 814 aa14.59□□□□□ -0.07
HMGN1-208ENST00000443046 OR6C4Q8NGE1 309 aa14.59□□□□□ -0.07
HMGN1-208ENST00000443046 SCG3Q8WXD2 468 aaKnown RBP14.59□□□□□ -0.07
HMGN1-208ENST00000443046 ARHGEF2Q92974 986 aaKnown RBP14.59□□□□□ -0.07
HMGN1-208ENST00000443046 FAM81BQ96LP2 452 aa14.59□□□□□ -0.07
HMGN1-208ENST00000443046 TBCBQ99426 244 aa14.59□□□□□ -0.07
HMGN1-208ENST00000443046 OSBPL1AQ9BXW6 950 aa14.59□□□□□ -0.07
HMGN1-208ENST00000443046 CPEB1Q9BZB8 566 aaKnown RBP14.59□□□□□ -0.07
HMGN1-208ENST00000443046 EDEM3Q9BZQ6 932 aa14.59□□□□□ -0.07
HMGN1-208ENST00000443046 TM6SF2Q9BZW4 377 aa14.59□□□□□ -0.07
HMGN1-208ENST00000443046 ZYG11BQ9C0D3 744 aa14.59□□□□□ -0.07
HMGN1-208ENST00000443046 B3GNT4Q9C0J1 378 aa14.59□□□□□ -0.07
HMGN1-208ENST00000443046 PPARGC1AQ9UBK2 798 aaKnown RBP14.59□□□□□ -0.07
HMGN1-208ENST00000443046 STAP1Q9ULZ2 295 aa14.59□□□□□ -0.07
HMGN1-208ENST00000443046 PAXBP1Q9Y5B6 917 aa14.59□□□□□ -0.07
HMGN1-208ENST00000443046 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.59□□□□□ -0.07
HMGN1-208ENST00000443046 SPTAN1Q13813 2472 aaKnown RBP14.59□□□□□ -0.07
HMGN1-208ENST00000443046 A0A1W2PQC6 194 aa14.58□□□□□ -0.08
HMGN1-208ENST00000443046 TMEM110-MUSTN1A8MSY1 372 aa14.58□□□□□ -0.08
HMGN1-208ENST00000443046 IQCJ-SCHIP1C9J366 451 aaPredicted RBP14.58□□□□□ -0.08
HMGN1-208ENST00000443046 MMP20O60882 483 aa14.58□□□□□ -0.08
HMGN1-208ENST00000443046 SRGAP2O75044 1071 aa14.58□□□□□ -0.08
HMGN1-208ENST00000443046 TM7SF2O76062 418 aa14.58□□□□□ -0.08
HMGN1-208ENST00000443046 POP4O95707 220 aaKnown RBP14.58□□□□□ -0.08
HMGN1-208ENST00000443046 GNA14O95837 355 aa14.58□□□□□ -0.08
HMGN1-208ENST00000443046 UGT2B4P06133 528 aa14.58□□□□□ -0.08
HMGN1-208ENST00000443046 JMJD7P0C870 316 aa14.58□□□□□ -0.08
HMGN1-208ENST00000443046 ITIH1P19827 911 aa14.58□□□□□ -0.08
HMGN1-208ENST00000443046 ACVRL1P37023 503 aa14.58□□□□□ -0.08
HMGN1-208ENST00000443046 SCNN1AP37088 669 aa14.58□□□□□ -0.08
HMGN1-208ENST00000443046 ETV5P41161 510 aa14.58□□□□□ -0.08
HMGN1-208ENST00000443046 SULT1E1P49888 294 aa14.58□□□□□ -0.08
HMGN1-208ENST00000443046 CYP4F2P78329 520 aa14.58□□□□□ -0.08
HMGN1-208ENST00000443046 DEUP1Q05D60 604 aa14.58□□□□□ -0.08
HMGN1-208ENST00000443046 UBAP2LQ14157 1087 aaKnown RBP14.58□□□□□ -0.08
HMGN1-208ENST00000443046 ALG11Q2TAA5 492 aa14.58□□□□□ -0.08
HMGN1-208ENST00000443046 MYLK3Q32MK0 819 aa14.58□□□□□ -0.08
HMGN1-208ENST00000443046 OGFOD3Q6PK18 319 aa14.58□□□□□ -0.08
HMGN1-208ENST00000443046 VASH2Q86V25 355 aa14.58□□□□□ -0.08
HMGN1-208ENST00000443046 SLITRK4Q8IW52 837 aa14.58□□□□□ -0.08
HMGN1-208ENST00000443046 OR2AP1Q8NGE2 309 aa14.58□□□□□ -0.08
HMGN1-208ENST00000443046 OR6K2Q8NGY2 324 aa14.58□□□□□ -0.08
HMGN1-208ENST00000443046 KLHL32Q96NJ5 620 aa14.58□□□□□ -0.08
HMGN1-208ENST00000443046 EPAS1Q99814 870 aa14.58□□□□□ -0.08
HMGN1-208ENST00000443046 GDPD2Q9HCC8 539 aa14.58□□□□□ -0.08
HMGN1-208ENST00000443046 FOXJ2Q9P0K8 574 aa14.58□□□□□ -0.08
HMGN1-208ENST00000443046 SIRPGQ9P1W8 387 aa14.58□□□□□ -0.08
HMGN1-208ENST00000443046 GPR34Q9UPC5 381 aa14.58□□□□□ -0.08
HMGN1-208ENST00000443046 NOTCH2Q04721 2471 aa14.57□□□□□ -0.08
HMGN1-208ENST00000443046 SDK2Q58EX2 2172 aa14.57□□□□□ -0.08
HMGN1-208ENST00000443046 C9orf172C9J069 976 aa14.57□□□□□ -0.08
HMGN1-208ENST00000443046 PNLIPP16233 465 aa14.57□□□□□ -0.08
HMGN1-208ENST00000443046 SLC9A1P19634 815 aa14.57□□□□□ -0.08
HMGN1-208ENST00000443046 CD82P27701 267 aa14.57□□□□□ -0.08
HMGN1-208ENST00000443046 GABRB2P47870 512 aa14.57□□□□□ -0.08
HMGN1-208ENST00000443046 APBA1Q02410 837 aa14.57□□□□□ -0.08
HMGN1-208ENST00000443046 IRF4Q15306 451 aa14.57□□□□□ -0.08
HMGN1-208ENST00000443046 KLHL40Q2TBA0 621 aa14.57□□□□□ -0.08
HMGN1-208ENST00000443046 TRNP1Q6NT89 227 aa14.57□□□□□ -0.08
HMGN1-208ENST00000443046 NYAP1Q6ZVC0 841 aa14.57□□□□□ -0.08
HMGN1-208ENST00000443046 TMPRSS9Q7Z410 1059 aa14.57□□□□□ -0.08
HMGN1-208ENST00000443046 TTC7BQ86TV6 843 aa14.57□□□□□ -0.08
HMGN1-208ENST00000443046 GKN2Q86XP6 184 aa14.57□□□□□ -0.08
HMGN1-208ENST00000443046 HID1Q8IV36 788 aa14.57□□□□□ -0.08
HMGN1-208ENST00000443046 ZSCAN1Q8NBB4 408 aa14.57□□□□□ -0.08
HMGN1-208ENST00000443046 NELFBQ8WX92 580 aa14.57□□□□□ -0.08
HMGN1-208ENST00000443046 TSACCQ96A04 125 aaPredicted RBP14.57□□□□□ -0.08
HMGN1-208ENST00000443046 TIGD1Q96MW7 591 aa14.57□□□□□ -0.08
HMGN1-208ENST00000443046 C1QTNF7Q9BXJ2 289 aa14.57□□□□□ -0.08
HMGN1-208ENST00000443046 ADNPQ9H2P0 1102 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms