RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 ST3GAL5Q9UNP4 418 aa16.57■□□□□ 0.24
CLCNKA-203ENST00000439316 NEU3Q9UQ49 428 aa16.57■□□□□ 0.24
CLCNKA-203ENST00000439316 NOD1Q9Y239 953 aa16.57■□□□□ 0.24
CLCNKA-203ENST00000439316 AAR2Q9Y312 384 aaKnown RBP16.57■□□□□ 0.24
CLCNKA-203ENST00000439316 MYLKQ15746 1914 aa16.57■□□□□ 0.24
CLCNKA-203ENST00000439316 MYBPHLA2RUH7 354 aa16.57■□□□□ 0.24
CLCNKA-203ENST00000439316 SDHDO14521 159 aa16.57■□□□□ 0.24
CLCNKA-203ENST00000439316 ACOT8O14734 319 aa16.57■□□□□ 0.24
CLCNKA-203ENST00000439316 HSPA1AP0DMV8 641 aaKnown RBP16.57■□□□□ 0.24
CLCNKA-203ENST00000439316 HSPA1BP0DMV9 641 aaKnown RBP16.57■□□□□ 0.24
CLCNKA-203ENST00000439316 ARNTP27540 789 aa16.57■□□□□ 0.24
CLCNKA-203ENST00000439316 LHX1P48742 406 aa16.57■□□□□ 0.24
CLCNKA-203ENST00000439316 SH3BGRP55822 239 aaPredicted RBP16.57■□□□□ 0.24
CLCNKA-203ENST00000439316 MGAT3Q09327 533 aa16.57■□□□□ 0.24
CLCNKA-203ENST00000439316 ZNF460Q14592 562 aa16.57■□□□□ 0.24
CLCNKA-203ENST00000439316 TWF2Q6IBS0 349 aaKnown RBP16.57■□□□□ 0.24
CLCNKA-203ENST00000439316 DENND5AQ6IQ26 1287 aa16.57■□□□□ 0.24
CLCNKA-203ENST00000439316 TAC4Q86UU9 113 aa16.57■□□□□ 0.24
CLCNKA-203ENST00000439316 DENND6AQ8IWF6 608 aa16.57■□□□□ 0.24
CLCNKA-203ENST00000439316 SPATA22Q8NHS9 363 aa16.57■□□□□ 0.24
CLCNKA-203ENST00000439316 USP33Q8TEY7 942 aa16.57■□□□□ 0.24
CLCNKA-203ENST00000439316 EDEM1Q92611 657 aa16.57■□□□□ 0.24
CLCNKA-203ENST00000439316 NXNL1Q96CM4 212 aa16.57■□□□□ 0.24
CLCNKA-203ENST00000439316 PRICKLE1Q96MT3 831 aaPredicted RBP16.57■□□□□ 0.24
CLCNKA-203ENST00000439316 FCRL5Q96RD9 977 aa16.57■□□□□ 0.24
CLCNKA-203ENST00000439316 MRPL46Q9H2W6 279 aaKnown RBP16.57■□□□□ 0.24
CLCNKA-203ENST00000439316 ETAA1Q9NY74 926 aa16.57■□□□□ 0.24
CLCNKA-203ENST00000439316 TRPC5OSA6NMA1 111 aa16.56■□□□□ 0.24
CLCNKA-203ENST00000439316 CFLARO15519 480 aa16.56■□□□□ 0.24
CLCNKA-203ENST00000439316 VAPBO95292 243 aa16.56■□□□□ 0.24
CLCNKA-203ENST00000439316 MYCP01106 439 aaPredicted RBP16.56■□□□□ 0.24
CLCNKA-203ENST00000439316 ETS2P15036 469 aa16.56■□□□□ 0.24
CLCNKA-203ENST00000439316 STMN1P16949 149 aa16.56■□□□□ 0.24
CLCNKA-203ENST00000439316 ART3Q13508 389 aa16.56■□□□□ 0.24
CLCNKA-203ENST00000439316 PELI3Q8N2H9 469 aa16.56■□□□□ 0.24
CLCNKA-203ENST00000439316 TMEM86AQ8N2M4 240 aa16.56■□□□□ 0.24
CLCNKA-203ENST00000439316 ZFP42Q96MM3 310 aa16.56■□□□□ 0.24
CLCNKA-203ENST00000439316 TSEN34Q9BSV6 310 aaKnown RBP16.56■□□□□ 0.24
CLCNKA-203ENST00000439316 COPS7BQ9H9Q2 264 aaPredicted RBP16.56■□□□□ 0.24
CLCNKA-203ENST00000439316 MRM3Q9HC36 420 aaKnown RBP16.56■□□□□ 0.24
CLCNKA-203ENST00000439316 AP4B1Q9Y6B7 739 aa16.56■□□□□ 0.24
CLCNKA-203ENST00000439316 A0A1W2PQ45 241 aaPredicted RBP16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 A0A1W2PQY0 241 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 TMEM233B4DJY2 109 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 STX16-NPEPL1H3BU86 382 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 RPLP2P05387 115 aaKnown RBP16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 CCNCP24863 283 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 MSX2P35548 267 aaPredicted RBP16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 DNAJB13P59910 316 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 CTBP1Q13363 440 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 POU6F1Q14863 301 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 SH2D4BQ5SQS7 431 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 ARHGAP36Q6ZRI8 547 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 PIWIL4Q7Z3Z4 852 aaKnown RBP16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 AHI1Q8N157 1196 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 CCNYL1Q8N7R7 359 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 TXNDC5Q8NBS9 432 aaKnown RBP16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 PPHLN1Q8NEY8 458 aaKnown RBP16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 PTCD2Q8WV60 388 aaKnown RBP16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 IRGQQ8WZA9 623 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 SMARCD1Q96GM5 515 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 ZNF419Q96HQ0 510 aaPredicted RBP16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 KLHL32Q96NJ5 620 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 PKP2Q99959 881 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 MRPL57Q9BQC6 102 aaKnown RBP16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 OSBPL2Q9H1P3 480 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 AGO3Q9H9G7 860 aaKnown RBP16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 UTP6Q9NYH9 597 aaKnown RBP16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 PLK2Q9NYY3 685 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 CACNG4Q9UBN1 327 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 TCAF1Q9Y4C2 921 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 A0A087X1B8 175 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 ANXA9O76027 345 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 OR6B1O95007 311 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 PGM3O95394 542 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 MT-CYBP00156 380 aaPredicted RBP16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 ADRA1AP35348 466 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 SLC1A2P43004 574 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 RPL5P46777 297 aaKnown RBP16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 HSPA13P48723 471 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 ESRP1Q6NXG1 681 aaKnown RBP16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 SPATA24Q86W54 205 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 ARHGAP12Q8IWW6 846 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 RNF148Q8N7C7 305 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 C2CD4AQ8NCU7 369 aaPredicted RBP16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 IPMKQ8NFU5 416 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 IL12RB2Q99665 862 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 NPAS2Q99743 824 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 FICDQ9BVA6 458 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 FTHL17Q9BXU8 183 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 UBE2OQ9C0C9 1292 aaKnown RBP16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 UNC93B1Q9H1C4 597 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 TSPYL2Q9H2G4 693 aaPredicted RBP16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 ZNF696Q9H7X3 374 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 GLOD4Q9HC38 313 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 CLIC5Q9NZA1 410 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 NCKIPSDQ9NZQ3 722 aa16.55■□□□□ 0.24
CLCNKA-203ENST00000439316 CDH9Q9ULB4 789 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms