RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 RALGAPA1Q6GYQ0 2036 aa12.62□□□□□ -0.39
SKA1-203ENST00000417656 USP34Q70CQ2 3546 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 ZFHX2Q9C0A1 2572 aaPredicted RBP12.61□□□□□ -0.39
SKA1-203ENST00000417656 DMDP11532 3685 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 TSPAN11A1L157 253 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 PATE3B3GLJ2 98 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 SPINT1O43278 529 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 ZSCAN12O43309 604 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 SERPINA4P29622 427 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 CETN2P41208 172 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 MAPK8P45983 427 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 NR2C2P49116 596 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 IFI35P80217 286 aaPredicted RBP12.61□□□□□ -0.39
SKA1-203ENST00000417656 DSC2Q02487 901 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 ITKQ08881 620 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 NSUN2Q08J23 767 aaKnown RBP eCLIP12.61□□□□□ -0.39
SKA1-203ENST00000417656 GRM3Q14832 879 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 NOMO1Q15155 1222 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 RPS6KA1Q15418 735 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 WDR45BQ5MNZ6 344 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 SYCP2LQ5T4T6 812 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 CFAP58Q5T655 872 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 PEAR1Q5VY43 1037 aaPredicted RBP12.61□□□□□ -0.39
SKA1-203ENST00000417656 TCEAL6Q6IPX3 200 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 FBXL19Q6PCT2 694 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 BZW1Q7L1Q6 419 aaKnown RBP12.61□□□□□ -0.39
SKA1-203ENST00000417656 ZSWIM9Q86XI8 627 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 SYT12Q8IV01 421 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 ZCCHC9Q8N567 271 aaKnown RBP12.61□□□□□ -0.39
SKA1-203ENST00000417656 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.61□□□□□ -0.39
SKA1-203ENST00000417656 ACTL9Q8TC94 416 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 TFB1MQ8WVM0 346 aaKnown RBP12.61□□□□□ -0.39
SKA1-203ENST00000417656 TCEAL3Q969E4 200 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 SEMA3CQ99985 751 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 FAM118BQ9BPY3 351 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 POLR1EQ9GZS1 481 aaKnown RBP12.61□□□□□ -0.39
SKA1-203ENST00000417656 MIR1-1HGQ9H1L0 117 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 NOD2Q9HC29 1040 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 PREBQ9HCU5 417 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 TMEM74BQ9NUR3 256 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 TRMT1Q9NXH9 659 aaKnown RBP12.61□□□□□ -0.39
SKA1-203ENST00000417656 EIF2B4Q9UI10 523 aaKnown RBP12.61□□□□□ -0.39
SKA1-203ENST00000417656 GGT7Q9UJ14 662 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 PILRBQ9UKJ0 227 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 EFR3BQ9Y2G0 817 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 SLCO1B1Q9Y6L6 691 aa12.61□□□□□ -0.39
SKA1-203ENST00000417656 TP53BP1Q12888 1972 aaPredicted RBP12.61□□□□□ -0.39
SKA1-203ENST00000417656 TBC1D3DA0A087WVF3 549 aa12.6□□□□□ -0.39
SKA1-203ENST00000417656 TBC1D3IA0A087WXS9 549 aa12.6□□□□□ -0.39
SKA1-203ENST00000417656 TBC1D3EA0A087X179 549 aa12.6□□□□□ -0.39
SKA1-203ENST00000417656 TBC1D3KA0A087X1G2 549 aa12.6□□□□□ -0.39
SKA1-203ENST00000417656 TBC1D3FA6NER0 549 aaPredicted RBP12.6□□□□□ -0.39
SKA1-203ENST00000417656 USP27XA6NNY8 438 aa12.6□□□□□ -0.39
SKA1-203ENST00000417656 C10orf142B7Z368 130 aa12.6□□□□□ -0.39
SKA1-203ENST00000417656 TBC1D3LB9A6J9 549 aa12.6□□□□□ -0.39
SKA1-203ENST00000417656 RNGTTO60942 597 aaKnown RBP12.6□□□□□ -0.39
SKA1-203ENST00000417656 TJP3O95049 919 aa12.6□□□□□ -0.39
SKA1-203ENST00000417656 JCHAINP01591 159 aa12.6□□□□□ -0.39
SKA1-203ENST00000417656 PRKCGP05129 697 aa12.6□□□□□ -0.39
SKA1-203ENST00000417656 TBC1D3HP0C7X1 549 aa12.6□□□□□ -0.39
SKA1-203ENST00000417656 MAT2AP31153 395 aaKnown RBP12.6□□□□□ -0.39
SKA1-203ENST00000417656 OTUD4Q01804 1114 aaKnown RBP12.6□□□□□ -0.39
SKA1-203ENST00000417656 BCL2L1Q07817 233 aa12.6□□□□□ -0.39
SKA1-203ENST00000417656 CCDC15Q0P6D6 951 aa12.6□□□□□ -0.39
SKA1-203ENST00000417656 TRAF2Q12933 501 aa12.6□□□□□ -0.39
SKA1-203ENST00000417656 PLA2G2CQ5R387 149 aa12.6□□□□□ -0.39
SKA1-203ENST00000417656 SEL1L2Q5TEA6 688 aa12.6□□□□□ -0.39
SKA1-203ENST00000417656 TBC1D3GQ6DHY5 549 aa12.6□□□□□ -0.39
SKA1-203ENST00000417656 ALG1LQ6GMV1 187 aa12.6□□□□□ -0.39
SKA1-203ENST00000417656 TBC1D3CQ6IPX1 549 aa12.6□□□□□ -0.39
SKA1-203ENST00000417656 TBC1D3Q8IZP1 549 aaPredicted RBP12.6□□□□□ -0.39
SKA1-203ENST00000417656 PAF1Q8N7H5 531 aa12.6□□□□□ -0.39
SKA1-203ENST00000417656 CNTD1Q8N815 330 aa12.6□□□□□ -0.39
SKA1-203ENST00000417656 ZNF641Q96N77 438 aaPredicted RBP12.6□□□□□ -0.39
SKA1-203ENST00000417656 IL12RB2Q99665 862 aa12.6□□□□□ -0.39
SKA1-203ENST00000417656 ORAI3Q9BRQ5 295 aa12.6□□□□□ -0.39
SKA1-203ENST00000417656 BRD8Q9H0E9 1235 aa12.6□□□□□ -0.39
SKA1-203ENST00000417656 KDM4CQ9H3R0 1056 aa12.6□□□□□ -0.39
SKA1-203ENST00000417656 SUV39H2Q9H5I1 410 aa12.6□□□□□ -0.39
SKA1-203ENST00000417656 SEMA4GQ9NTN9 838 aa12.6□□□□□ -0.39
SKA1-203ENST00000417656 DKK3Q9UBP4 350 aa12.6□□□□□ -0.39
SKA1-203ENST00000417656 FADS3Q9Y5Q0 445 aa12.6□□□□□ -0.39
SKA1-203ENST00000417656 PCDH15Q96QU1 1955 aa12.6□□□□□ -0.39
SKA1-203ENST00000417656 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.59□□□□□ -0.39
SKA1-203ENST00000417656 A0A1W2PQU0 124 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 TCRBV7S2A1N4TA0A589 114 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 UPK3BL1B0FP48 263 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 UPK3BL2E5RIL1 263 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 H7C0C1 242 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 TRAFD1O14545 582 aaPredicted RBP12.59□□□□□ -0.39
SKA1-203ENST00000417656 KCNK3O14649 394 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 LATO43561 262 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 AP1G1O43747 822 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 LRP3O75074 770 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 PCDH8O95206 1070 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 CPP00450 1065 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 CFIP05156 583 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 TIMP2P16035 220 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 ITIH2P19823 946 aa12.59□□□□□ -0.39
SKA1-203ENST00000417656 TGM1P22735 817 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms