RNA–Protein interactions for RNA: ENST00000409417.5

PDLIM2-207, Transcript of PDZ and LIM domain 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM2, Length 1,487 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-207ENST00000409417 C1orf216Q8TAB5 229 aa20.07■□□□□ 0.8
PDLIM2-207ENST00000409417 LRRN4Q8WUT4 740 aa20.07■□□□□ 0.8
PDLIM2-207ENST00000409417 RAB7BQ96AH8 199 aa20.07■□□□□ 0.8
PDLIM2-207ENST00000409417 HES6Q96HZ4 224 aa20.07■□□□□ 0.8
PDLIM2-207ENST00000409417 NUDCD1Q96RS6 583 aa20.07■□□□□ 0.8
PDLIM2-207ENST00000409417 HEMGNQ9BXL5 484 aa20.07■□□□□ 0.8
PDLIM2-207ENST00000409417 MIR1-1HGQ9H1L0 117 aa20.07■□□□□ 0.8
PDLIM2-207ENST00000409417 SMOC1Q9H4F8 434 aa20.07■□□□□ 0.8
PDLIM2-207ENST00000409417 HAUS2Q9NVX0 235 aa20.07■□□□□ 0.8
PDLIM2-207ENST00000409417 SAE1Q9UBE0 346 aaPredicted RBP20.07■□□□□ 0.8
PDLIM2-207ENST00000409417 AMACRQ9UHK6 382 aa20.07■□□□□ 0.8
PDLIM2-207ENST00000409417 PACSIN2Q9UNF0 486 aaPredicted RBP20.07■□□□□ 0.8
PDLIM2-207ENST00000409417 CEP250Q9BV73 2442 aa20.07■□□□□ 0.8
PDLIM2-207ENST00000409417 LAMA1P25391 3075 aa20.06■□□□□ 0.8
PDLIM2-207ENST00000409417 AP1G1O43747 822 aa20.06■□□□□ 0.8
PDLIM2-207ENST00000409417 GJB3O75712 270 aa20.06■□□□□ 0.8
PDLIM2-207ENST00000409417 PYGMP11217 842 aa20.06■□□□□ 0.8
PDLIM2-207ENST00000409417 SERPINA4P29622 427 aa20.06■□□□□ 0.8
PDLIM2-207ENST00000409417 PPP2CBP62714 309 aa20.06■□□□□ 0.8
PDLIM2-207ENST00000409417 PPP2CAP67775 309 aa20.06■□□□□ 0.8
PDLIM2-207ENST00000409417 DUOXA1Q1HG43 343 aa20.06■□□□□ 0.8
PDLIM2-207ENST00000409417 BRAT1Q6PJG6 821 aa20.06■□□□□ 0.8
PDLIM2-207ENST00000409417 PRR23CQ6ZRP0 262 aa20.06■□□□□ 0.8
PDLIM2-207ENST00000409417 KIAA2013Q8IYS2 634 aa20.06■□□□□ 0.8
PDLIM2-207ENST00000409417 P3H4Q92791 437 aa20.06■□□□□ 0.8
PDLIM2-207ENST00000409417 OSBPL8Q9BZF1 889 aa20.06■□□□□ 0.8
PDLIM2-207ENST00000409417 NT5MQ9NPB1 228 aa20.06■□□□□ 0.8
PDLIM2-207ENST00000409417 RBM22Q9NW64 420 aaKnown RBP eCLIP20.06■□□□□ 0.84e-6■■■■□ 24.3
PDLIM2-207ENST00000409417 FADS3Q9Y5Q0 445 aa20.06■□□□□ 0.8
PDLIM2-207ENST00000409417 RALGAPA1Q6GYQ0 2036 aa20.06■□□□□ 0.8
PDLIM2-207ENST00000409417 KNL1Q8NG31 2342 aa20.06■□□□□ 0.8
PDLIM2-207ENST00000409417 PI4KAP42356 2102 aa20.06■□□□□ 0.8
PDLIM2-207ENST00000409417 TNRC6BQ9UPQ9 1833 aaKnown RBP20.06■□□□□ 0.8
PDLIM2-207ENST00000409417 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 A0A1W2PPC4 97 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 TSPAN11A1L157 253 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 PATE3B3GLJ2 98 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 KHNYNO15037 678 aaKnown RBP20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 BCAT2O15382 392 aaPredicted RBP20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 DDX3YO15523 660 aaKnown RBP20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 PECAM1P16284 738 aaPredicted RBP20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 SUOXP51687 545 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 BCL2L1Q07817 233 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 AP1B1Q10567 949 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 SF3A2Q15428 464 aaKnown RBP20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 TRIM61Q5EBN2 209 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 ALG1LQ6GMV1 187 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 TCEAL6Q6IPX3 200 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 SLC23A3Q6PIS1 610 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 TTC7BQ86TV6 843 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 TCEAL3Q969E4 200 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 ALS2CR12Q96Q35 445 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 ORAI3Q9BRQ5 295 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 POLR1EQ9GZS1 481 aaKnown RBP20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 KCNF1Q9H3M0 494 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 NOD2Q9HC29 1040 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 SCUBE2Q9NQ36 999 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 CACNA1EQ15878 2313 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 A0A1B0GTW7 788 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 APOC4-APOC2K7ER74 178 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 KCNK1O00180 336 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 TRAFD1O14545 582 aaPredicted RBP20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 AREL1O15033 823 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 PCDH8O95206 1070 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 APOC2P02655 101 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 SERPINF2P08697 491 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 TIMP2P16035 220 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 CES1P23141 567 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 NUDT1P36639 197 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 MAXP61244 160 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 IFI35P80217 286 aaPredicted RBP20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 CFAP58Q5T655 872 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 HORMAD1Q86X24 394 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 ZCCHC9Q8N567 271 aaKnown RBP20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 C12orf50Q8NA57 414 aaPredicted RBP20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 ECHDC3Q96DC8 303 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 NSMCE3Q96MG7 304 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 EBF2Q9HAK2 575 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 CAPN10Q9HC96 672 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 SLC6A14Q9UN76 642 aa20.05■□□□□ 0.8
PDLIM2-207ENST00000409417 SHROOM3Q8TF72 1996 aa20.04■□□□□ 0.8
PDLIM2-207ENST00000409417 TTC24A2A3L6 582 aaPredicted RBP20.04■□□□□ 0.8
PDLIM2-207ENST00000409417 PRR5-ARHGAP8B1AHC4 643 aa20.04■□□□□ 0.8
PDLIM2-207ENST00000409417 TSPAN6O43657 245 aa20.04■□□□□ 0.8
PDLIM2-207ENST00000409417 RNGTTO60942 597 aaKnown RBP20.04■□□□□ 0.8
PDLIM2-207ENST00000409417 NEBLO76041 1014 aa20.04■□□□□ 0.8
PDLIM2-207ENST00000409417 JCHAINP01591 159 aa20.04■□□□□ 0.8
PDLIM2-207ENST00000409417 CFIP05156 583 aa20.04■□□□□ 0.8
PDLIM2-207ENST00000409417 ABL2P42684 1182 aa20.04■□□□□ 0.8
PDLIM2-207ENST00000409417 IRX4P78413 519 aa20.04■□□□□ 0.8
PDLIM2-207ENST00000409417 LMNB2Q03252 620 aa20.04■□□□□ 0.8
PDLIM2-207ENST00000409417 PRKD1Q15139 912 aaPredicted RBP20.04■□□□□ 0.8
PDLIM2-207ENST00000409417 UGP2Q16851 508 aa20.04■□□□□ 0.8
PDLIM2-207ENST00000409417 CCDC181Q5TID7 509 aa20.04■□□□□ 0.8
PDLIM2-207ENST00000409417 PRPF39Q86UA1 669 aaKnown RBP20.04■□□□□ 0.8
PDLIM2-207ENST00000409417 TFB1MQ8WVM0 346 aaKnown RBP20.04■□□□□ 0.8
PDLIM2-207ENST00000409417 SPOCK2Q92563 424 aa20.04■□□□□ 0.8
PDLIM2-207ENST00000409417 FEM1CQ96JP0 617 aa20.04■□□□□ 0.8
PDLIM2-207ENST00000409417 IL12RB2Q99665 862 aa20.04■□□□□ 0.8
PDLIM2-207ENST00000409417 SEMA3CQ99985 751 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms