RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 PRLP01236 227 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 CES1P23141 567 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 RPL22P35268 128 aaKnown RBP16.1■□□□□ 0.17
HMGA1-204ENST00000401473 RAD51Q06609 339 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 C2orf54Q08AI8 447 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 TRAF2Q12933 501 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 TRIP13Q15645 432 aaPredicted RBP16.1■□□□□ 0.17
HMGA1-204ENST00000401473 RALGPS1Q5JS13 557 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 DSG4Q86SJ6 1040 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 ARRDC3Q96B67 414 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 TUBGCP5Q96RT8 1024 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 GBA3Q9H227 469 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 ATP13A3Q9H7F0 1226 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 BCCIPQ9P287 314 aaKnown RBP eCLIP16.1■□□□□ 0.17
HMGA1-204ENST00000401473 RSPH14Q9UHP6 348 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 CCDC188H7C350 402 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 HTRA2O43464 458 aaPredicted RBP16.1■□□□□ 0.17
HMGA1-204ENST00000401473 ALDH1A2O94788 518 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 STK10O94804 968 aaKnown RBP16.1■□□□□ 0.17
HMGA1-204ENST00000401473 SERPINF2P08697 491 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 C5AR1P21730 350 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 HOXA6P31267 233 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 PTGIRP43119 386 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 TPMTP51580 245 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 MRPS25P82663 173 aaKnown RBP16.1■□□□□ 0.17
HMGA1-204ENST00000401473 BCL2L1Q07817 233 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 TUBB2AQ13885 445 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 WHAMMP3Q1A5X7 153 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 ZNF805Q5CZA5 627 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 FAXCQ5TGI0 409 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 KIAA1324Q6UXG2 1013 aaKnown RBP16.1■□□□□ 0.17
HMGA1-204ENST00000401473 KDELC2Q7Z4H8 507 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 CCDC89Q8N998 374 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 RLN3Q8WXF3 142 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 ECHDC3Q96DC8 303 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 ZNF641Q96N77 438 aaPredicted RBP16.1■□□□□ 0.17
HMGA1-204ENST00000401473 KRT12Q99456 494 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 TUBB2BQ9BVA1 445 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 NEUROG2Q9H2A3 272 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 ITM2CQ9NQX7 267 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 FBXO4Q9UKT5 387 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 RAI2Q9Y5P3 530 aa16.1■□□□□ 0.17
HMGA1-204ENST00000401473 A0A1W2PP55 124 aa16.09■□□□□ 0.17
HMGA1-204ENST00000401473 H0Y858 1186 aa16.09■□□□□ 0.17
HMGA1-204ENST00000401473 FZD6O60353 706 aa16.09■□□□□ 0.17
HMGA1-204ENST00000401473 DNTTP04053 509 aa16.09■□□□□ 0.17
HMGA1-204ENST00000401473 SP9P0CG40 484 aa16.09■□□□□ 0.17
HMGA1-204ENST00000401473 MAPK8P45983 427 aa16.09■□□□□ 0.17
HMGA1-204ENST00000401473 NUBP1P53384 320 aa16.09■□□□□ 0.17
HMGA1-204ENST00000401473 TCF15Q12870 199 aa16.09■□□□□ 0.17
HMGA1-204ENST00000401473 PARP6Q2NL67 630 aa16.09■□□□□ 0.17
HMGA1-204ENST00000401473 ARHGEF18Q6ZSZ5 1173 aa16.09■□□□□ 0.17
HMGA1-204ENST00000401473 PRSS33Q8NF86 280 aa16.09■□□□□ 0.17
HMGA1-204ENST00000401473 PDCD6IPQ8WUM4 868 aaKnown RBP16.09■□□□□ 0.17
HMGA1-204ENST00000401473 NELL1Q92832 810 aa16.09■□□□□ 0.17
HMGA1-204ENST00000401473 MLPHQ9BV36 600 aaPredicted RBP16.09■□□□□ 0.17
HMGA1-204ENST00000401473 OSBPL1AQ9BXW6 950 aa16.09■□□□□ 0.17
HMGA1-204ENST00000401473 PABPC3Q9H361 631 aaKnown RBP16.09■□□□□ 0.17
HMGA1-204ENST00000401473 ETNK1Q9HBU6 452 aa16.09■□□□□ 0.17
HMGA1-204ENST00000401473 HAUS2Q9NVX0 235 aa16.09■□□□□ 0.17
HMGA1-204ENST00000401473 FBXL12Q9NXK8 326 aa16.09■□□□□ 0.17
HMGA1-204ENST00000401473 USP36Q9P275 1121 aaKnown RBP16.09■□□□□ 0.17
HMGA1-204ENST00000401473 CHKBQ9Y259 395 aa16.09■□□□□ 0.17
HMGA1-204ENST00000401473 PCDHB9Q9Y5E1 797 aa16.09■□□□□ 0.17
HMGA1-204ENST00000401473 TRPM6Q9BX84 2022 aa16.09■□□□□ 0.17
HMGA1-204ENST00000401473 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.08■□□□□ 0.17
HMGA1-204ENST00000401473 C16orf96A6NNT2 1141 aa16.08■□□□□ 0.17
HMGA1-204ENST00000401473 C1QTNF3-AMACRE9PGA6 284 aa16.08■□□□□ 0.17
HMGA1-204ENST00000401473 PMPCBO75439 489 aa16.08■□□□□ 0.17
HMGA1-204ENST00000401473 ZNF189O75820 626 aaPredicted RBP16.08■□□□□ 0.17
HMGA1-204ENST00000401473 ADH1BP00325 375 aa16.08■□□□□ 0.17
HMGA1-204ENST00000401473 ITIH2P19823 946 aa16.08■□□□□ 0.17
HMGA1-204ENST00000401473 SERPINA4P29622 427 aa16.08■□□□□ 0.17
HMGA1-204ENST00000401473 LMNB2Q03252 620 aa16.08■□□□□ 0.17
HMGA1-204ENST00000401473 ZBTB16Q05516 673 aa16.08■□□□□ 0.17
HMGA1-204ENST00000401473 CNTN1Q12860 1018 aa16.08■□□□□ 0.17
HMGA1-204ENST00000401473 OLIG2Q13516 323 aa16.08■□□□□ 0.17
HMGA1-204ENST00000401473 GRM3Q14832 879 aa16.08■□□□□ 0.17
HMGA1-204ENST00000401473 PTPRRQ15256 657 aa16.08■□□□□ 0.17
HMGA1-204ENST00000401473 SYCP2LQ5T4T6 812 aa16.08■□□□□ 0.17
HMGA1-204ENST00000401473 FAM46CQ5VWP2 391 aa16.08■□□□□ 0.17
HMGA1-204ENST00000401473 KDELC1Q6UW63 502 aa16.08■□□□□ 0.17
HMGA1-204ENST00000401473 PARS2Q7L3T8 475 aaKnown RBP16.08■□□□□ 0.17
HMGA1-204ENST00000401473 HDDC3Q8N4P3 179 aa16.08■□□□□ 0.17
HMGA1-204ENST00000401473 FAM160A2Q8N612 972 aaPredicted RBP16.08■□□□□ 0.17
HMGA1-204ENST00000401473 SLCO2A1Q92959 643 aa16.08■□□□□ 0.17
HMGA1-204ENST00000401473 MRGPRX2Q96LB1 330 aa16.08■□□□□ 0.17
HMGA1-204ENST00000401473 TDRD1Q9BXT4 1180 aaKnown RBP16.08■□□□□ 0.17
HMGA1-204ENST00000401473 FAM153AQ9UHL3 310 aa16.08■□□□□ 0.17
HMGA1-204ENST00000401473 FEZ2Q9UHY8 353 aaPredicted RBP16.08■□□□□ 0.17
HMGA1-204ENST00000401473 GPR179Q6PRD1 2367 aa16.08■□□□□ 0.16
HMGA1-204ENST00000401473 SPAG17Q6Q759 2223 aa16.08■□□□□ 0.16
HMGA1-204ENST00000401473 KRT14P02533 472 aa16.08■□□□□ 0.16
HMGA1-204ENST00000401473 ACADMP11310 421 aa16.08■□□□□ 0.16
HMGA1-204ENST00000401473 TIMP2P16035 220 aa16.08■□□□□ 0.16
HMGA1-204ENST00000401473 ITGB7P26010 798 aa16.08■□□□□ 0.16
HMGA1-204ENST00000401473 P2RY2P41231 377 aa16.08■□□□□ 0.16
HMGA1-204ENST00000401473 FNTBP49356 437 aa16.08■□□□□ 0.16
HMGA1-204ENST00000401473 PCSK7Q16549 785 aa16.08■□□□□ 0.16
HMGA1-204ENST00000401473 LRRC73Q5JTD7 316 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms