RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 ABCG8Q9H221 673 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 ALKBH4Q9NXW9 302 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 TESQ9UGI8 421 aaKnown RBP4.25□□□□□ -1.73
HMGB1-204ENST00000399489 SEC63Q9UGP8 760 aaKnown RBP4.25□□□□□ -1.73
HMGB1-204ENST00000399489 PCSK1NQ9UHG2 260 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 OSGIN1Q9UJX0 560 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 DRG1Q9Y295 367 aaKnown RBP4.25□□□□□ -1.73
HMGB1-204ENST00000399489 NOX1Q9Y5S8 564 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 SNX14Q9Y5W7 946 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 CLRN2A0PK11 232 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 ENO4A6NNW6 628 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 TEX22C9J3V5 150 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 PJA2O43164 708 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 SLC25A17O43808 307 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 CBFA2T3O75081 653 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 PEX11AO75192 247 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 RASAL1O95294 804 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 SIX3O95343 332 aaPredicted RBP4.24□□□□□ -1.73
HMGB1-204ENST00000399489 CDK4P11802 303 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 AGAP20933 346 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 KELP23276 732 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 MC5RP33032 325 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 PTPN7P35236 360 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 PRKCIP41743 596 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 MATR3P43243 847 aaKnown RBP eCLIP4.24□□□□□ -1.73
HMGB1-204ENST00000399489 ELLP55199 621 aaPredicted RBP4.24□□□□□ -1.73
HMGB1-204ENST00000399489 ADARP55265 1226 aaKnown RBP4.24□□□□□ -1.73
HMGB1-204ENST00000399489 ARF5P84085 180 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 SATB1Q01826 763 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 CEBPZQ03701 1054 aaKnown RBP4.24□□□□□ -1.73
HMGB1-204ENST00000399489 KRT17Q04695 432 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 SLFN5Q08AF3 891 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 RESTQ13127 1097 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 SP140Q13342 867 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 IL11RAQ14626 422 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 MYLK3Q32MK0 819 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 LEXMQ3ZCV2 418 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 AMOTQ4VCS5 1084 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 PDCD4Q53EL6 469 aaKnown RBP4.24□□□□□ -1.73
HMGB1-204ENST00000399489 TTC39AQ5SRH9 613 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 AFMIDQ63HM1 303 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 MSANTD1Q6ZTZ1 278 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 ARHGAP30Q7Z6I6 1101 aaPredicted RBP4.24□□□□□ -1.73
HMGB1-204ENST00000399489 RHPN2Q8IUC4 686 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 FAM185AQ8N0U4 392 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 TNIP2Q8NFZ5 429 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 MBD3L2Q8NHZ7 208 aaPredicted RBP4.24□□□□□ -1.73
HMGB1-204ENST00000399489 LINC00476Q8WZB0 136 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 PGAM5Q96HS1 289 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 C1orf74Q96LT6 269 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 CD180Q99467 661 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 MYOCQ99972 504 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 CLSTN3Q9BQT9 956 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 STRA6Q9BX79 667 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 CCDC134Q9H6E4 229 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 AATFQ9NY61 560 aaKnown RBP eCLIP4.24□□□□□ -1.73
HMGB1-204ENST00000399489 MOCS1Q9NZB8 636 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 DNAJB11Q9UBS4 358 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 CD207Q9UJ71 328 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 OSGIN2Q9Y236 505 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 SESN1Q9Y6P5 492 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 ZMYM3Q14202 1370 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 SPATA31A6Q5VVP1 1343 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 LOC105369274A0A096LPK9 316 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 LOC102723532A0A0G2JNH3 316 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 GXYLT2A0PJZ3 443 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 UNC119BA6NIH7 251 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 IKBKBO14920 756 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 PAGE4O60829 102 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 REC8O95072 547 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 COX7A2P14406 83 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 ADSSP30520 456 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 CAMLGP49069 296 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 ATXN3P54252 364 aaPredicted RBP4.24□□□□□ -1.73
HMGB1-204ENST00000399489 PMS2P54278 862 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 CASP9P55211 416 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 CLRN1P58418 232 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 GMFBP60983 142 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 PPATQ06203 517 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 TCF15Q12870 199 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 TUBB3Q13509 450 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 BMPR2Q13873 1038 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 ASTE1Q2TB18 679 aaPredicted RBP4.24□□□□□ -1.73
HMGB1-204ENST00000399489 ANKRD20A4Q4UJ75 823 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 HSP90AA5PQ58FG0 334 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 ANKRD20A8PQ5CZ79 823 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 ANKRD20A2Q5SQ80 823 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 MFSD14BQ5SR56 506 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 ANKRD20A1Q5TYW2 823 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 ANKRD20A3Q5VUR7 823 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 FAM160B1Q5W0V3 765 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 OTUD7BQ6GQQ9 843 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 KIAA0930Q6ICG6 404 aaPredicted RBP4.24□□□□□ -1.73
HMGB1-204ENST00000399489 ISLR2Q6UXK2 745 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 C15orf52Q6ZUT6 534 aaKnown RBP4.24□□□□□ -1.73
HMGB1-204ENST00000399489 RUFY3Q7L099 469 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 MAML2Q8IZL2 1156 aaPredicted RBP4.24□□□□□ -1.73
HMGB1-204ENST00000399489 OR4N4Q8N0Y3 316 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 MINDY1Q8N5J2 469 aa4.24□□□□□ -1.73
HMGB1-204ENST00000399489 PLD5Q8N7P1 536 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms