RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 PADI4Q9UM07 663 aa16.35■□□□□ 0.21
CUX2-202ENST00000397643 A0A1W2PQM1 296 aa16.34■□□□□ 0.21
CUX2-202ENST00000397643 D6RAR5 112 aa16.34■□□□□ 0.21
CUX2-202ENST00000397643 AREL1O15033 823 aa16.34■□□□□ 0.21
CUX2-202ENST00000397643 ANXA6P08133 673 aa16.34■□□□□ 0.21
CUX2-202ENST00000397643 HGFP14210 728 aa16.34■□□□□ 0.21
CUX2-202ENST00000397643 SLC9A1P19634 815 aa16.34■□□□□ 0.21
CUX2-202ENST00000397643 DNA2P51530 1060 aa16.34■□□□□ 0.21
CUX2-202ENST00000397643 GNA12Q03113 381 aa16.34■□□□□ 0.21
CUX2-202ENST00000397643 MAN2A1Q16706 1144 aa16.34■□□□□ 0.21
CUX2-202ENST00000397643 ZNF805Q5CZA5 627 aa16.34■□□□□ 0.21
CUX2-202ENST00000397643 TRNP1Q6NT89 227 aa16.34■□□□□ 0.21
CUX2-202ENST00000397643 LRRC31Q6UY01 552 aa16.34■□□□□ 0.21
CUX2-202ENST00000397643 MACC1Q6ZN28 852 aa16.34■□□□□ 0.21
CUX2-202ENST00000397643 BNIPLQ7Z465 357 aa16.34■□□□□ 0.21
CUX2-202ENST00000397643 PLPP6Q8IY26 295 aa16.34■□□□□ 0.21
CUX2-202ENST00000397643 KYQ8NBH2 561 aa16.34■□□□□ 0.21
CUX2-202ENST00000397643 ISG20Q96AZ6 181 aaKnown RBP16.34■□□□□ 0.21
CUX2-202ENST00000397643 SGF29Q96ES7 293 aa16.34■□□□□ 0.21
CUX2-202ENST00000397643 TUBGCP2Q9BSJ2 902 aa16.34■□□□□ 0.21
CUX2-202ENST00000397643 FOXP3Q9BZS1 431 aa16.34■□□□□ 0.21
CUX2-202ENST00000397643 PLCB1Q9NQ66 1216 aa16.34■□□□□ 0.21
CUX2-202ENST00000397643 MBNL1Q9NR56 388 aaKnown RBP16.34■□□□□ 0.21
CUX2-202ENST00000397643 HECAQ9UBI9 543 aaPredicted RBP16.34■□□□□ 0.21
CUX2-202ENST00000397643 APEX2Q9UBZ4 518 aa16.34■□□□□ 0.21
CUX2-202ENST00000397643 LIMA1Q9UHB6 759 aaKnown RBP16.34■□□□□ 0.21
CUX2-202ENST00000397643 AJAP1Q9UKB5 411 aaPredicted RBP16.34■□□□□ 0.21
CUX2-202ENST00000397643 STAP1Q9ULZ2 295 aa16.34■□□□□ 0.21
CUX2-202ENST00000397643 HEMK1Q9Y5R4 338 aaPredicted RBP16.34■□□□□ 0.21
CUX2-202ENST00000397643 LRP4O75096 1905 aa16.34■□□□□ 0.21
CUX2-202ENST00000397643 RELNP78509 3460 aa16.33■□□□□ 0.21
CUX2-202ENST00000397643 LRRK2Q5S007 2527 aa16.33■□□□□ 0.2
CUX2-202ENST00000397643 ITGB2P05107 769 aa16.33■□□□□ 0.2
CUX2-202ENST00000397643 PRKCSHP14314 528 aaPredicted RBP16.33■□□□□ 0.2
CUX2-202ENST00000397643 ACVRL1P37023 503 aa16.33■□□□□ 0.2
CUX2-202ENST00000397643 THOP1P52888 689 aa16.33■□□□□ 0.2
CUX2-202ENST00000397643 RNASE9P60153 205 aaKnown RBP16.33■□□□□ 0.2
CUX2-202ENST00000397643 YPEL5P62699 121 aa16.33■□□□□ 0.2
CUX2-202ENST00000397643 DEUP1Q05D60 604 aa16.33■□□□□ 0.2
CUX2-202ENST00000397643 EIF3IQ13347 325 aaKnown RBP16.33■□□□□ 0.2
CUX2-202ENST00000397643 PTK2BQ14289 1009 aa16.33■□□□□ 0.2
CUX2-202ENST00000397643 KRT31Q15323 416 aa16.33■□□□□ 0.2
CUX2-202ENST00000397643 SLC25A52Q3SY17 297 aa16.33■□□□□ 0.2
CUX2-202ENST00000397643 RAB11FIP2Q7L804 512 aa16.33■□□□□ 0.2
CUX2-202ENST00000397643 VPS36Q86VN1 386 aa16.33■□□□□ 0.2
CUX2-202ENST00000397643 GAS2L3Q86XJ1 694 aa16.33■□□□□ 0.2
CUX2-202ENST00000397643 ZDHHC17Q8IUH5 632 aa16.33■□□□□ 0.2
CUX2-202ENST00000397643 FBXO39Q8N4B4 442 aa16.33■□□□□ 0.2
CUX2-202ENST00000397643 ARL10Q8N8L6 244 aa16.33■□□□□ 0.2
CUX2-202ENST00000397643 TP53I13Q8NBR0 393 aaPredicted RBP16.33■□□□□ 0.2
CUX2-202ENST00000397643 CCDC74AQ96AQ1 378 aa16.33■□□□□ 0.2
CUX2-202ENST00000397643 FAM81BQ96LP2 452 aa16.33■□□□□ 0.2
CUX2-202ENST00000397643 SLC13A1Q9BZW2 595 aa16.33■□□□□ 0.2
CUX2-202ENST00000397643 RBSNQ9H1K0 784 aa16.33■□□□□ 0.2
CUX2-202ENST00000397643 HSD3B7Q9H2F3 369 aa16.33■□□□□ 0.2
CUX2-202ENST00000397643 EPB41L5Q9HCM4 733 aa16.33■□□□□ 0.2
CUX2-202ENST00000397643 NDFIP2Q9NV92 336 aa16.33■□□□□ 0.2
CUX2-202ENST00000397643 CXorf51AA0A1B0GTR3 108 aa16.32■□□□□ 0.2
CUX2-202ENST00000397643 PES1O00541 588 aaKnown RBP16.32■□□□□ 0.2
CUX2-202ENST00000397643 NEMP1O14524 444 aa16.32■□□□□ 0.2
CUX2-202ENST00000397643 SUV39H1O43463 412 aa16.32■□□□□ 0.2
CUX2-202ENST00000397643 SRGAP2O75044 1071 aa16.32■□□□□ 0.2
CUX2-202ENST00000397643 GJB6O95452 261 aa16.32■□□□□ 0.2
CUX2-202ENST00000397643 F9P00740 461 aa16.32■□□□□ 0.2
CUX2-202ENST00000397643 FAM87AP0C7U9 286 aa16.32■□□□□ 0.2
CUX2-202ENST00000397643 CCKBRP32239 447 aa16.32■□□□□ 0.2
CUX2-202ENST00000397643 FLT3P36888 993 aa16.32■□□□□ 0.2
CUX2-202ENST00000397643 EIF4A3P38919 411 aaKnown RBP16.32■□□□□ 0.2
CUX2-202ENST00000397643 VWA3BQ502W6 1294 aa16.32■□□□□ 0.2
CUX2-202ENST00000397643 LRRC73Q5JTD7 316 aa16.32■□□□□ 0.2
CUX2-202ENST00000397643 ACBD5Q5T8D3 534 aaPredicted RBP16.32■□□□□ 0.2
CUX2-202ENST00000397643 ESRP1Q6NXG1 681 aaKnown RBP16.32■□□□□ 0.2
CUX2-202ENST00000397643 XKR5Q6UX68 686 aa16.32■□□□□ 0.2
CUX2-202ENST00000397643 NYAP1Q6ZVC0 841 aa16.32■□□□□ 0.2
CUX2-202ENST00000397643 USP53Q70EK8 1073 aa16.32■□□□□ 0.2
CUX2-202ENST00000397643 SLC47A2Q86VL8 602 aa16.32■□□□□ 0.2
CUX2-202ENST00000397643 SDR16C5Q8N3Y7 309 aa16.32■□□□□ 0.2
CUX2-202ENST00000397643 PCDH19Q8TAB3 1148 aa16.32■□□□□ 0.2
CUX2-202ENST00000397643 GFM1Q96RP9 751 aaKnown RBP16.32■□□□□ 0.2
CUX2-202ENST00000397643 HAPLN3Q96S86 360 aa16.32■□□□□ 0.2
CUX2-202ENST00000397643 ZYG11BQ9C0D3 744 aa16.32■□□□□ 0.2
CUX2-202ENST00000397643 SYNCQ9H7C4 482 aa16.32■□□□□ 0.2
CUX2-202ENST00000397643 TAB2Q9NYJ8 693 aa16.32■□□□□ 0.2
CUX2-202ENST00000397643 PAXBP1Q9Y5B6 917 aa16.32■□□□□ 0.2
CUX2-202ENST00000397643 LRRC10BA6NIK2 292 aa16.31■□□□□ 0.2
CUX2-202ENST00000397643 SERPINC1P01008 464 aa16.31■□□□□ 0.2
CUX2-202ENST00000397643 UGT2B4P06133 528 aa16.31■□□□□ 0.2
CUX2-202ENST00000397643 PNMA6AP0CW24 399 aaPredicted RBP16.31■□□□□ 0.2
CUX2-202ENST00000397643 LIPCP11150 499 aa16.31■□□□□ 0.2
CUX2-202ENST00000397643 ATP1A3P13637 1013 aa16.31■□□□□ 0.2
CUX2-202ENST00000397643 WT1P19544 449 aaPredicted RBP16.31■□□□□ 0.2
CUX2-202ENST00000397643 CLCN1P35523 988 aa16.31■□□□□ 0.2
CUX2-202ENST00000397643 SCNN1AP37088 669 aa16.31■□□□□ 0.2
CUX2-202ENST00000397643 COPB1P53618 953 aaKnown RBP16.31■□□□□ 0.2
CUX2-202ENST00000397643 INHBCP55103 352 aa16.31■□□□□ 0.2
CUX2-202ENST00000397643 CCL7P80098 99 aa16.31■□□□□ 0.2
CUX2-202ENST00000397643 PPARDQ03181 441 aa16.31■□□□□ 0.2
CUX2-202ENST00000397643 FILIP1LQ4L180 1135 aa16.31■□□□□ 0.2
CUX2-202ENST00000397643 COLEC12Q5KU26 742 aa16.31■□□□□ 0.2
CUX2-202ENST00000397643 FAXCQ5TGI0 409 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms