RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 KRT10P13645 584 aa21.96■■□□□ 1.11
CLN3-207ENST00000395653 TGM2P21980 687 aa21.96■■□□□ 1.11
CLN3-207ENST00000395653 SERPINA4P29622 427 aa21.96■■□□□ 1.11
CLN3-207ENST00000395653 ABL2P42684 1182 aa21.96■■□□□ 1.11
CLN3-207ENST00000395653 NR2C2P49116 596 aa21.96■■□□□ 1.11
CLN3-207ENST00000395653 PEX5P50542 639 aa21.96■■□□□ 1.11
CLN3-207ENST00000395653 SCNN1BP51168 640 aa21.96■■□□□ 1.11
CLN3-207ENST00000395653 RWDD2BP57060 319 aa21.96■■□□□ 1.11
CLN3-207ENST00000395653 DYNLT1P63172 113 aa21.96■■□□□ 1.11
CLN3-207ENST00000395653 PPIDQ08752 370 aaKnown RBP21.96■■□□□ 1.11
CLN3-207ENST00000395653 ZNF662Q6ZS27 426 aa21.96■■□□□ 1.11
CLN3-207ENST00000395653 PRPF39Q86UA1 669 aaKnown RBP21.96■■□□□ 1.11
CLN3-207ENST00000395653 CCDC13Q8IYE1 715 aa21.96■■□□□ 1.11
CLN3-207ENST00000395653 PGBD5Q8N414 524 aa21.96■■□□□ 1.11
CLN3-207ENST00000395653 CCNYQ8ND76 341 aa21.96■■□□□ 1.11
CLN3-207ENST00000395653 ANP32BQ92688 251 aaKnown RBP21.96■■□□□ 1.11
CLN3-207ENST00000395653 NUDCD1Q96RS6 583 aa21.96■■□□□ 1.11
CLN3-207ENST00000395653 EBF2Q9HAK2 575 aa21.96■■□□□ 1.11
CLN3-207ENST00000395653 FADS3Q9Y5Q0 445 aa21.96■■□□□ 1.11
CLN3-207ENST00000395653 SLCO1B1Q9Y6L6 691 aa21.96■■□□□ 1.11
CLN3-207ENST00000395653 CAPN6Q9Y6Q1 641 aa21.96■■□□□ 1.11
CLN3-207ENST00000395653 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP21.95■■□□□ 1.1
CLN3-207ENST00000395653 MIF4GDA9UHW6 222 aaKnown RBP21.95■■□□□ 1.1
CLN3-207ENST00000395653 CST8O60676 142 aa21.95■■□□□ 1.1
CLN3-207ENST00000395653 SUOXP51687 545 aa21.95■■□□□ 1.1
CLN3-207ENST00000395653 BCL2L1Q07817 233 aa21.95■■□□□ 1.1
CLN3-207ENST00000395653 PDK1Q15118 436 aa21.95■■□□□ 1.1
CLN3-207ENST00000395653 KAZNQ674X7 775 aa21.95■■□□□ 1.1
CLN3-207ENST00000395653 BRAT1Q6PJG6 821 aa21.95■■□□□ 1.1
CLN3-207ENST00000395653 BZW1Q7L1Q6 419 aaKnown RBP21.95■■□□□ 1.1
CLN3-207ENST00000395653 ZSCAN30Q86W11 494 aa21.95■■□□□ 1.1
CLN3-207ENST00000395653 CAMK1DQ8IU85 385 aa21.95■■□□□ 1.1
CLN3-207ENST00000395653 EDEM2Q9BV94 578 aa21.95■■□□□ 1.1
CLN3-207ENST00000395653 BRD8Q9H0E9 1235 aa21.95■■□□□ 1.1
CLN3-207ENST00000395653 TM9SF3Q9HD45 589 aa21.95■■□□□ 1.1
CLN3-207ENST00000395653 RXFP3Q9NSD7 469 aa21.95■■□□□ 1.1
CLN3-207ENST00000395653 HAUS2Q9NVX0 235 aa21.95■■□□□ 1.1
CLN3-207ENST00000395653 GUCA1BQ9UMX6 200 aa21.95■■□□□ 1.1
CLN3-207ENST00000395653 DMTF1Q9Y222 760 aa21.95■■□□□ 1.1
CLN3-207ENST00000395653 SHROOM3Q8TF72 1996 aa21.94■■□□□ 1.1
CLN3-207ENST00000395653 A0A1W2PQU0 124 aa21.94■■□□□ 1.1
CLN3-207ENST00000395653 PPP1R12AO14974 1030 aaPredicted RBP21.94■■□□□ 1.1
CLN3-207ENST00000395653 AREL1O15033 823 aa21.94■■□□□ 1.1
CLN3-207ENST00000395653 TSPAN6O43657 245 aa21.94■■□□□ 1.1
CLN3-207ENST00000395653 GJB3O75712 270 aa21.94■■□□□ 1.1
CLN3-207ENST00000395653 PCDH8O95206 1070 aa21.94■■□□□ 1.1
CLN3-207ENST00000395653 CCNB1P14635 433 aa21.94■■□□□ 1.1
CLN3-207ENST00000395653 PTPN7P35236 360 aa21.94■■□□□ 1.1
CLN3-207ENST00000395653 AFF3P51826 1226 aaKnown RBP21.94■■□□□ 1.1
CLN3-207ENST00000395653 RACK1P63244 317 aaKnown RBP21.94■■□□□ 1.1
CLN3-207ENST00000395653 SETMARQ53H47 684 aaPredicted RBP21.94■■□□□ 1.1
CLN3-207ENST00000395653 CFAP58Q5T655 872 aa21.94■■□□□ 1.1
CLN3-207ENST00000395653 ALG1LQ6GMV1 187 aa21.94■■□□□ 1.1
CLN3-207ENST00000395653 KIAA1161Q6NSJ0 714 aa21.94■■□□□ 1.1
CLN3-207ENST00000395653 NPNTQ6UXI9 565 aa21.94■■□□□ 1.1
CLN3-207ENST00000395653 TTC7BQ86TV6 843 aa21.94■■□□□ 1.1
CLN3-207ENST00000395653 HORMAD1Q86X24 394 aa21.94■■□□□ 1.1
CLN3-207ENST00000395653 NETO1Q8TDF5 533 aa21.94■■□□□ 1.1
CLN3-207ENST00000395653 UBE2Q2Q8WVN8 375 aa21.94■■□□□ 1.1
CLN3-207ENST00000395653 ECHDC3Q96DC8 303 aa21.94■■□□□ 1.1
CLN3-207ENST00000395653 LGMNQ99538 433 aa21.94■■□□□ 1.1
CLN3-207ENST00000395653 POLR1EQ9GZS1 481 aaKnown RBP21.94■■□□□ 1.1
CLN3-207ENST00000395653 NT5MQ9NPB1 228 aa21.94■■□□□ 1.1
CLN3-207ENST00000395653 SCUBE2Q9NQ36 999 aa21.94■■□□□ 1.1
CLN3-207ENST00000395653 EFR3BQ9Y2G0 817 aa21.94■■□□□ 1.1
CLN3-207ENST00000395653 LOC105378220A0A1B0GUY1 285 aaPredicted RBP21.93■■□□□ 1.1
CLN3-207ENST00000395653 GDF9O60383 454 aa21.93■■□□□ 1.1
CLN3-207ENST00000395653 TIMP2P16035 220 aa21.93■■□□□ 1.1
CLN3-207ENST00000395653 ENGP17813 658 aa21.93■■□□□ 1.1
CLN3-207ENST00000395653 GRIA4P48058 902 aa21.93■■□□□ 1.1
CLN3-207ENST00000395653 LIMK1P53667 647 aa21.93■■□□□ 1.1
CLN3-207ENST00000395653 MAXP61244 160 aa21.93■■□□□ 1.1
CLN3-207ENST00000395653 ADCY2Q08462 1091 aa21.93■■□□□ 1.1
CLN3-207ENST00000395653 LLGL1Q15334 1064 aa21.93■■□□□ 1.1
CLN3-207ENST00000395653 TMEM259Q4ZIN3 620 aa21.93■■□□□ 1.1
CLN3-207ENST00000395653 BBS12Q6ZW61 710 aa21.93■■□□□ 1.1
CLN3-207ENST00000395653 UBL4BQ8N7F7 174 aa21.93■■□□□ 1.1
CLN3-207ENST00000395653 ALG3Q92685 438 aa21.93■■□□□ 1.1
CLN3-207ENST00000395653 NSMCE3Q96MG7 304 aa21.93■■□□□ 1.1
CLN3-207ENST00000395653 RBM22Q9NW64 420 aaKnown RBP eCLIP21.93■■□□□ 1.1
CLN3-207ENST00000395653 PCDH15Q96QU1 1955 aa21.93■■□□□ 1.1
CLN3-207ENST00000395653 LAMA1P25391 3075 aa21.92■■□□□ 1.1
CLN3-207ENST00000395653 TRAFD1O14545 582 aaPredicted RBP21.92■■□□□ 1.1
CLN3-207ENST00000395653 ARHGAP33O14559 1287 aa21.92■■□□□ 1.1
CLN3-207ENST00000395653 SPINT1O43278 529 aa21.92■■□□□ 1.1
CLN3-207ENST00000395653 SOCS5O75159 536 aa21.92■■□□□ 1.1
CLN3-207ENST00000395653 FTCDO95954 541 aa21.92■■□□□ 1.1
CLN3-207ENST00000395653 SYPP08247 313 aa21.92■■□□□ 1.1
CLN3-207ENST00000395653 SDHBP21912 280 aa21.92■■□□□ 1.1
CLN3-207ENST00000395653 MAT2AP31153 395 aaKnown RBP21.92■■□□□ 1.1
CLN3-207ENST00000395653 CETN2P41208 172 aa21.92■■□□□ 1.1
CLN3-207ENST00000395653 RPS21P63220 83 aaKnown RBP21.92■■□□□ 1.1
CLN3-207ENST00000395653 IFI35P80217 286 aaPredicted RBP21.92■■□□□ 1.1
CLN3-207ENST00000395653 TEAD4Q15561 434 aa21.92■■□□□ 1.1
CLN3-207ENST00000395653 UGP2Q16851 508 aa21.92■■□□□ 1.1
CLN3-207ENST00000395653 NAPEPLDQ6IQ20 393 aa21.92■■□□□ 1.1
CLN3-207ENST00000395653 LRRN4Q8WUT4 740 aa21.92■■□□□ 1.1
CLN3-207ENST00000395653 SPOCK2Q92563 424 aa21.92■■□□□ 1.1
CLN3-207ENST00000395653 FEM1CQ96JP0 617 aa21.92■■□□□ 1.1
CLN3-207ENST00000395653 SLC6A18Q96N87 628 aa21.92■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms