RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 CSH2P0DML3 217 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 TAS2R41P59536 307 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 FAM46CQ5VWP2 391 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 UNC93AQ86WB7 457 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 ZNF540Q8NDQ6 660 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 ETNPPLQ8TBG4 499 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 RASSF1Q9NS23 344 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 ITGB1BP2Q9UKP3 347 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 HAT1O14929 419 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 ADSLP30566 484 aaPredicted RBP12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 RARRES1P49788 294 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 PKNOX1P55347 436 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 NEK7Q8TDX7 302 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 CDADC1Q9BWV3 514 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 TMEM134Q9H6X4 195 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 A0A0B4J269 797 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 SIGLEC16A6NMB1 481 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 TBL1XO60907 577 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 OTCP00480 354 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 CES1P23141 567 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 FAUP35544 74 aaKnown RBP12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 GRIA3P42263 894 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 RFX5P48382 616 aaPredicted RBP12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 HSPA14Q0VDF9 509 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 KIAA1324Q6UXG2 1013 aaKnown RBP12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 GCNT7Q6ZNI0 430 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 LRRC17Q8N6Y2 441 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 OR4A15Q8NGL6 344 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 SENP8Q96LD8 212 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 ULBP1Q9BZM6 244 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 GRIP2Q9C0E4 1043 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 MAT2BQ9NZL9 334 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 IQCMA0A1B0GVH7 501 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 FARP2O94887 1054 aaPredicted RBP12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 HGFP14210 728 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 CHKAP35790 457 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 TMEM119Q4V9L6 283 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 SLC30A10Q6XR72 485 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 KIAA0895Q8NCT3 520 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 ZNF510Q9Y2H8 683 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 PSMD11O00231 422 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 ATP5F1P24539 256 aaPredicted RBP12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 CBX5P45973 191 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 MAPK10P53779 464 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 USP41Q3LFD5 358 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 HIPK1Q86Z02 1210 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 PYDC1Q8WXC3 89 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 TEFMQ96QE5 360 aaKnown RBP12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 NTRK1P04629 796 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 TSHRP16473 764 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 KLRK1P26718 216 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 SLC12A3P55017 1021 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 OTOP1Q7RTM1 612 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 TAF8Q7Z7C8 310 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 ZNF558Q96NG5 402 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 GGA2Q9UJY4 613 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 C15orf41Q9Y2V0 281 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 USP32Q8NFA0 1604 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 FAM92AA1XBS5 289 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 ULK1O75385 1050 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 LDOC1O95751 146 aaPredicted RBP12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 CAPGP40121 348 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 CDH8P55286 799 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 GPRIN3Q6ZVF9 776 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 MARK2Q7KZI7 788 aaKnown RBP12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 COX4I2Q96KJ9 171 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 ANKZF1Q9H8Y5 726 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 KCNQ5Q9NR82 932 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 MCUBQ9NWR8 336 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 ST3GAL5Q9UNP4 418 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 GIT1Q9Y2X7 761 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 CCNB1P14635 433 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 ARF5P84085 180 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 AP5B1Q2VPB7 878 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 NBPF12Q5TAG4 269 aaPredicted RBP12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 BRD9Q9H8M2 597 aa12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 GPC6Q9Y625 555 aaPredicted RBP12.88□□□□□ -0.35
CCDC88C-204ENST00000389857 E9PCH4 1651 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 SEC24AO95486 1093 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 ARFIP1P53367 373 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 TRAP1Q12931 704 aaKnown RBP12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 WDR60Q8WVS4 1066 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 SLC47A1Q96FL8 570 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 PRRG4Q9BZD6 226 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 PPIBP23284 216 aaKnown RBP12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 IGFALSP35858 605 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 GALNT3Q14435 633 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 PTGR2Q8N8N7 351 aaPredicted RBP12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 OR52K1Q8NGK4 314 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 CERS2Q96G23 380 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 FRMPD1Q5SYB0 1578 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 A0A1W2PRG6 482 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 RECQL4O94761 1208 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 GRIA4P48058 902 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 RAB10P61026 200 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 FAAH2Q6GMR7 532 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 ADAMTSL2Q86TH1 951 aa12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 PCDH20Q8N6Y1 951 aaKnown RBP12.87□□□□□ -0.35
CCDC88C-204ENST00000389857 HJURPQ8NCD3 748 aaPredicted RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms