RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 VOPP1Q96AW1 172 aa17.02■□□□□ 0.32
HMGN4-201ENST00000377575 CCDC42Q96M95 316 aa17.02■□□□□ 0.32
HMGN4-201ENST00000377575 ZNF599Q96NL3 588 aa17.02■□□□□ 0.32
HMGN4-201ENST00000377575 SCNM1Q9BWG6 230 aa17.02■□□□□ 0.32
HMGN4-201ENST00000377575 CALN1Q9BXU9 219 aa17.02■□□□□ 0.32
HMGN4-201ENST00000377575 PCDH18Q9HCL0 1135 aa17.02■□□□□ 0.32
HMGN4-201ENST00000377575 IPO11Q9UI26 975 aaKnown RBP17.02■□□□□ 0.32
HMGN4-201ENST00000377575 ITM2BQ9Y287 266 aa17.02■□□□□ 0.32
HMGN4-201ENST00000377575 HS3ST3A1Q9Y663 406 aa17.02■□□□□ 0.32
HMGN4-201ENST00000377575 IGLON5A6NGN9 336 aa17.01■□□□□ 0.31
HMGN4-201ENST00000377575 AREL1O15033 823 aa17.01■□□□□ 0.31
HMGN4-201ENST00000377575 INSIG1O15503 277 aa17.01■□□□□ 0.31
HMGN4-201ENST00000377575 TNFSF14O43557 240 aa17.01■□□□□ 0.31
HMGN4-201ENST00000377575 HYAL3O43820 417 aaPredicted RBP17.01■□□□□ 0.31
HMGN4-201ENST00000377575 PROSCO94903 275 aa17.01■□□□□ 0.31
HMGN4-201ENST00000377575 TMEM253P0C7T8 217 aa17.01■□□□□ 0.31
HMGN4-201ENST00000377575 AMPD1P23109 780 aa17.01■□□□□ 0.31
HMGN4-201ENST00000377575 SERPINA4P29622 427 aa17.01■□□□□ 0.31
HMGN4-201ENST00000377575 GJC1P36383 396 aa17.01■□□□□ 0.31
HMGN4-201ENST00000377575 CSNK1DP48730 415 aa17.01■□□□□ 0.31
HMGN4-201ENST00000377575 RENBPP51606 427 aa17.01■□□□□ 0.31
HMGN4-201ENST00000377575 ADKP55263 362 aaKnown RBP17.01■□□□□ 0.31
HMGN4-201ENST00000377575 ELP6Q0PNE2 266 aa17.01■□□□□ 0.31
HMGN4-201ENST00000377575 SHBQ15464 509 aa17.01■□□□□ 0.31
HMGN4-201ENST00000377575 TMCO4Q5TGY1 634 aa17.01■□□□□ 0.31
HMGN4-201ENST00000377575 TXNRD3NBQ6F5E7 133 aa17.01■□□□□ 0.31
HMGN4-201ENST00000377575 BRAT1Q6PJG6 821 aa17.01■□□□□ 0.31
HMGN4-201ENST00000377575 ARHGAP36Q6ZRI8 547 aa17.01■□□□□ 0.31
HMGN4-201ENST00000377575 RAB44Q7Z6P3 723 aaPredicted RBP17.01■□□□□ 0.31
HMGN4-201ENST00000377575 GATAD2AQ86YP4 633 aa17.01■□□□□ 0.31
HMGN4-201ENST00000377575 DCP2Q8IU60 420 aaKnown RBP17.01■□□□□ 0.31
HMGN4-201ENST00000377575 ATPAF2Q8N5M1 289 aa17.01■□□□□ 0.31
HMGN4-201ENST00000377575 ASB12Q8WXK4 309 aa17.01■□□□□ 0.31
HMGN4-201ENST00000377575 ADAMTS14Q8WXS8 1223 aa17.01■□□□□ 0.31
HMGN4-201ENST00000377575 ZNF641Q96N77 438 aaPredicted RBP17.01■□□□□ 0.31
HMGN4-201ENST00000377575 LENG8Q96PV6 779 aaPredicted RBP17.01■□□□□ 0.31
HMGN4-201ENST00000377575 C1QTNF7Q9BXJ2 289 aa17.01■□□□□ 0.31
HMGN4-201ENST00000377575 C1QTNF2Q9BXJ5 285 aa17.01■□□□□ 0.31
HMGN4-201ENST00000377575 PACSIN1Q9BY11 444 aa17.01■□□□□ 0.31
HMGN4-201ENST00000377575 SUV39H2Q9H5I1 410 aa17.01■□□□□ 0.31
HMGN4-201ENST00000377575 ATP13A3Q9H7F0 1226 aa17.01■□□□□ 0.31
HMGN4-201ENST00000377575 NHEJ1Q9H9Q4 299 aaPredicted RBP17.01■□□□□ 0.31
HMGN4-201ENST00000377575 SEPT3Q9UH03 358 aa17.01■□□□□ 0.31
HMGN4-201ENST00000377575 GGT7Q9UJ14 662 aa17.01■□□□□ 0.31
HMGN4-201ENST00000377575 NEUROG3Q9Y4Z2 214 aa17.01■□□□□ 0.31
HMGN4-201ENST00000377575 PTPRBP23467 1997 aa17■□□□□ 0.31
HMGN4-201ENST00000377575 TDRD6O60522 2096 aaKnown RBP17■□□□□ 0.31
HMGN4-201ENST00000377575 TSPAN11A1L157 253 aa17■□□□□ 0.31
HMGN4-201ENST00000377575 AKR1B15C9JRZ8 316 aaPredicted RBP17■□□□□ 0.31
HMGN4-201ENST00000377575 FPGTO14772 594 aa17■□□□□ 0.31
HMGN4-201ENST00000377575 SPINT1O43278 529 aa17■□□□□ 0.31
HMGN4-201ENST00000377575 PAK4O96013 591 aaPredicted RBP17■□□□□ 0.31
HMGN4-201ENST00000377575 KRT7P08729 469 aa17■□□□□ 0.31
HMGN4-201ENST00000377575 SPINK2P20155 84 aa17■□□□□ 0.31
HMGN4-201ENST00000377575 MAN1A1P33908 653 aa17■□□□□ 0.31
HMGN4-201ENST00000377575 RABIFP47224 123 aa17■□□□□ 0.31
HMGN4-201ENST00000377575 CLDN2P57739 230 aa17■□□□□ 0.31
HMGN4-201ENST00000377575 NSUN2Q08J23 767 aaKnown RBP eCLIP17■□□□□ 0.31
HMGN4-201ENST00000377575 FGL2Q14314 439 aa17■□□□□ 0.31
HMGN4-201ENST00000377575 ZNF235Q14590 738 aa17■□□□□ 0.31
HMGN4-201ENST00000377575 LBRQ14739 615 aaKnown RBP17■□□□□ 0.31
HMGN4-201ENST00000377575 LRRC73Q5JTD7 316 aa17■□□□□ 0.31
HMGN4-201ENST00000377575 SRLQ86TD4 932 aa17■□□□□ 0.31
HMGN4-201ENST00000377575 BBS5Q8N3I7 341 aa17■□□□□ 0.31
HMGN4-201ENST00000377575 TSEN2Q8NCE0 465 aaKnown RBP17■□□□□ 0.31
HMGN4-201ENST00000377575 OR13H1Q8NG92 308 aa17■□□□□ 0.31
HMGN4-201ENST00000377575 FAM71BQ8TC56 605 aa17■□□□□ 0.31
HMGN4-201ENST00000377575 NSMCE1Q8WV22 266 aa17■□□□□ 0.31
HMGN4-201ENST00000377575 TSC1Q92574 1164 aa17■□□□□ 0.31
HMGN4-201ENST00000377575 ANP32EQ9BTT0 268 aa17■□□□□ 0.31
HMGN4-201ENST00000377575 TRIM5Q9C035 493 aa17■□□□□ 0.31
HMGN4-201ENST00000377575 ETNK2Q9NVF9 386 aa17■□□□□ 0.31
HMGN4-201ENST00000377575 SPEGQ15772 3267 aa16.99■□□□□ 0.31
HMGN4-201ENST00000377575 TM7SF2O76062 418 aa16.99■□□□□ 0.31
HMGN4-201ENST00000377575 TOP3BO95985 862 aaKnown RBP16.99■□□□□ 0.31
HMGN4-201ENST00000377575 TIMP2P16035 220 aa16.99■□□□□ 0.31
HMGN4-201ENST00000377575 HSPA9P38646 679 aaKnown RBP16.99■□□□□ 0.31
HMGN4-201ENST00000377575 AP1S1P61966 158 aa16.99■□□□□ 0.31
HMGN4-201ENST00000377575 ERAP2Q6P179 960 aa16.99■□□□□ 0.31
HMGN4-201ENST00000377575 Q6ZSR6 202 aa16.99■□□□□ 0.31
HMGN4-201ENST00000377575 MAP7D3Q8IWC1 876 aa16.99■□□□□ 0.31
HMGN4-201ENST00000377575 PAF1Q8N7H5 531 aa16.99■□□□□ 0.31
HMGN4-201ENST00000377575 IFT43Q96FT9 208 aa16.99■□□□□ 0.31
HMGN4-201ENST00000377575 PSKH2Q96QS6 385 aa16.99■□□□□ 0.31
HMGN4-201ENST00000377575 CHP1Q99653 195 aa16.99■□□□□ 0.31
HMGN4-201ENST00000377575 ZNF670Q9BS34 389 aa16.99■□□□□ 0.31
HMGN4-201ENST00000377575 KLHL11Q9NVR0 708 aa16.99■□□□□ 0.31
HMGN4-201ENST00000377575 MAP1BP46821 2468 aaKnown RBP16.99■□□□□ 0.31
HMGN4-201ENST00000377575 GOLGA8CPA6NN73 597 aa16.98■□□□□ 0.31
HMGN4-201ENST00000377575 RAD51BO15315 384 aa16.98■□□□□ 0.31
HMGN4-201ENST00000377575 ATXN1LP0C7T5 689 aaKnown RBP16.98■□□□□ 0.31
HMGN4-201ENST00000377575 RGRP47804 291 aa16.98■□□□□ 0.31
HMGN4-201ENST00000377575 BCL2L1Q07817 233 aa16.98■□□□□ 0.31
HMGN4-201ENST00000377575 DPYSL3Q14195 570 aa16.98■□□□□ 0.31
HMGN4-201ENST00000377575 PDK2Q15119 407 aa16.98■□□□□ 0.31
HMGN4-201ENST00000377575 UGP2Q16851 508 aa16.98■□□□□ 0.31
HMGN4-201ENST00000377575 TMEM52BQ4KMG9 183 aa16.98■□□□□ 0.31
HMGN4-201ENST00000377575 ZFYVE27Q5T4F4 411 aa16.98■□□□□ 0.31
HMGN4-201ENST00000377575 SLCO6A1Q86UG4 719 aa16.98■□□□□ 0.31
HMGN4-201ENST00000377575 LRRC49Q8IUZ0 686 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms