RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 PACS2Q86VP3 889 aa13.81□□□□□ -0.2
COL4A1-201ENST00000375820 RASAL3Q86YV0 1011 aa13.81□□□□□ -0.2
COL4A1-201ENST00000375820 ZFRQ96KR1 1074 aaKnown RBP13.81□□□□□ -0.2
COL4A1-201ENST00000375820 TRAV19A0A0A6YYK7 116 aa13.81□□□□□ -0.2
COL4A1-201ENST00000375820 CCDC189A1A4V9 331 aa13.81□□□□□ -0.2
COL4A1-201ENST00000375820 ACKR2O00590 384 aa13.81□□□□□ -0.2
COL4A1-201ENST00000375820 KRT36O76013 467 aa13.81□□□□□ -0.2
COL4A1-201ENST00000375820 CTNNB1P35222 781 aa13.81□□□□□ -0.2
COL4A1-201ENST00000375820 MED22Q15528 200 aa13.81□□□□□ -0.2
COL4A1-201ENST00000375820 GPR107Q5VW38 600 aa13.81□□□□□ -0.2
COL4A1-201ENST00000375820 RNF19BQ6ZMZ0 732 aa13.81□□□□□ -0.2
COL4A1-201ENST00000375820 OR7A2PQ8NGA2 310 aa13.81□□□□□ -0.2
COL4A1-201ENST00000375820 MYLPFQ96A32 169 aa13.81□□□□□ -0.2
COL4A1-201ENST00000375820 ZNF184Q99676 751 aaPredicted RBP13.81□□□□□ -0.2
COL4A1-201ENST00000375820 BRD9Q9H8M2 597 aa13.81□□□□□ -0.2
COL4A1-201ENST00000375820 COMMD9Q9P000 198 aa13.81□□□□□ -0.2
COL4A1-201ENST00000375820 C15orf41Q9Y2V0 281 aa13.81□□□□□ -0.2
COL4A1-201ENST00000375820 POLR3HQ9Y535 204 aaPredicted RBP13.81□□□□□ -0.2
COL4A1-201ENST00000375820 A0A088AWK7 358 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 MCIDASD6RGH6 385 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 SLC28A2O43868 658 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 ZNF10P21506 573 aaPredicted RBP13.8□□□□□ -0.2
COL4A1-201ENST00000375820 OMPP47874 163 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 STXBP1P61764 594 aaKnown RBP13.8□□□□□ -0.2
COL4A1-201ENST00000375820 ELF3P78545 371 aaPredicted RBP13.8□□□□□ -0.2
COL4A1-201ENST00000375820 MAMLD1Q13495 774 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 MAPKAPK3Q16644 382 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 PCID2Q5JVF3 399 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 CCSAPQ6IQ19 270 aaPredicted RBP13.8□□□□□ -0.2
COL4A1-201ENST00000375820 PHF10Q8WUB8 498 aaKnown RBP13.8□□□□□ -0.2
COL4A1-201ENST00000375820 LGMNQ99538 433 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 HACD1B0YJ81 288 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 APOC4-APOC2K7ER74 178 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 NKRFO15226 690 aaKnown RBP eCLIP13.8□□□□□ -0.2
COL4A1-201ENST00000375820 TOP3BO95985 862 aaKnown RBP13.8□□□□□ -0.2
COL4A1-201ENST00000375820 APOC2P02655 101 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 COX4I1P13073 169 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 HNMTP50135 292 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 MZT2AQ6P582 158 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 MAGEC3Q8TD91 643 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 PPP1R16AQ96I34 528 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 SEMA3CQ99985 751 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 GDF3Q9NR23 364 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 SPATA31A5Q5VU36 1347 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 SPATA31A7Q8IWB4 1347 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 CCDC182A6NF36 153 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 TRUB2O95900 331 aaKnown RBP13.8□□□□□ -0.2
COL4A1-201ENST00000375820 ADRB2P07550 413 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 SLURP2P0DP57 97 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 MARCKSL1P49006 195 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 FBXO48Q5FWF7 155 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 ANKS1BQ7Z6G8 1248 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 LRRC49Q8IUZ0 686 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 STAG3L4Q8TBR4 150 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 SNRNP25Q9BV90 132 aaKnown RBP13.8□□□□□ -0.2
COL4A1-201ENST00000375820 C1QTNF7Q9BXJ2 289 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 ATG10Q9H0Y0 220 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 NEUROD4Q9HD90 331 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 AKAP7Q9P0M2 348 aaPredicted RBP13.8□□□□□ -0.2
COL4A1-201ENST00000375820 PHF11Q9UIL8 331 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 DNMT3LQ9UJW3 386 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 IQCF5A8MTL0 148 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 NOS1APO75052 506 aaPredicted RBP13.8□□□□□ -0.2
COL4A1-201ENST00000375820 CATP04040 527 aaKnown RBP13.8□□□□□ -0.2
COL4A1-201ENST00000375820 HGFP14210 728 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 PDHA2P29803 388 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 PTPRNQ16849 979 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 FIGNQ5HY92 759 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 ZNF549Q6P9A3 640 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 SLC35C1Q96A29 364 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 MARCH7Q9H992 704 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 PLK2Q9NYY3 685 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 CHRNGP07510 517 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 UQCRBP14927 111 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 CEBPGP53567 150 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 WNT8BQ93098 351 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 NPAS2Q99743 824 aa13.8□□□□□ -0.2
COL4A1-201ENST00000375820 SNRPB2P08579 225 aaKnown RBP13.79□□□□□ -0.2
COL4A1-201ENST00000375820 PTPRAP18433 802 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 ITPKBP27987 946 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 TUFMP49411 452 aaKnown RBP13.79□□□□□ -0.2
COL4A1-201ENST00000375820 ZNF655Q8N720 491 aaPredicted RBP13.79□□□□□ -0.2
COL4A1-201ENST00000375820 NELL1Q92832 810 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 DPP7Q9UHL4 492 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 LRCH1Q9Y2L9 728 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 ALADP13716 330 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 WASP42768 502 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 SNRPD1P62314 119 aaKnown RBP13.79□□□□□ -0.2
COL4A1-201ENST00000375820 SPIRE1Q08AE8 756 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 RRP1BQ14684 758 aaKnown RBP13.79□□□□□ -0.2
COL4A1-201ENST00000375820 C10orf107Q8IVU9 208 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 KLHL5Q96PQ7 755 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 FNDC11Q9BVV2 318 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 HMX1Q9NP08 348 aaPredicted RBP13.79□□□□□ -0.2
COL4A1-201ENST00000375820 SEC24AO95486 1093 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 CCNA2P20248 432 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 AKT2P31751 481 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 CBFBQ13951 182 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 CAMK1Q14012 370 aa13.79□□□□□ -0.2
COL4A1-201ENST00000375820 IKBKEQ14164 716 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms